SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58968

Length: 1388 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58968

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	R-SNARE, VAMP72-family n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TFG8_PHYPA	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	r- vamp72-family	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	86%
Blast2go	vacuole organization	GO:0007033	Biological Process	86%
Blast2go	endosome	GO:0005768	Cellular Component	86%
Blast2go	SNARE complex	GO:0031201	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Synaptobrevin	IPR001388	-	86%
Blast2go	Longin	IPR010908	-	86%
Blast2go	Longin-like	IPR011012	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2K7

Fln msg:

Fln protein: MAQQSLIYSFVARGNIVLAEHTSFSGNFSIIAVQCLQKLPSNSNKFTYTCDNHTFNYLVDDGFVFLVVADEAAGRQVPFLFLERVKEDFKRRYGGRAETSMAHSLDKDYGPILRDHMQYCMDHPEELSKFFKIKAQVSEVKGIMMDNIEKVLDRGEKIELLVDKTEGLQFQADNFQRQGRQLRRKMWLQNLKFKLIVLGIVLVIMLIIWLSVCKGFSCH*

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCCTGAAGGTTTCATCGCGATTAGAAGAGACAAAAGCAAAATTACAAATCACATAAAAACAGGGAAACGTCGTGACCTTGGCTGTCACTCAATTGTTGTTGGCACCATTGGAAAATTGAGCCAGGGTTCGAACAAGGGTTTGTAGGTTTCTCATCTCTTTAAGAGCCGTTTTATACCAGACTTCGCCAATTTAAACAGCAGATCTCTGGAGCTTTCAGGCCCGGAATTGTCCCAGCTACTTGTGCTCTGCGTAATGAAAAATGAGGAATCTTCTCCTAGACCAATGAGGAGAGACGACGCCAGGCCATAATTTGGCAATACATTCGACATAGTTTGCAGTACATTACCAGTTCCGCCGATTCCAGAATTAATATTTTGACAAAATCAAGAACTAACTCCCAAAGGCAATTGCATGGTTTGATTCTGGGATAGTAGTTCTCCAACTCCGTCTGGACTGAACGCTAAATATAACCACAAAAGTCAAAAGTC_-_ATGGCACAGCAATCCTTAATATACAGTTTTGTGGCCAGGGGAAACATTGTACTTGCAGAGCATACATCATTTTCGGGGAATTTTAGTATTATTGCTGTCCAGTGCCTGCAAAAGCTGCCCTCAAACAGCAACAAGTTCACATACACATGTGATAACCACACATTCAATTACCTCGTGGATGATGGATTTGTGTTTCTTGTTGTTGCAGATGAAGCTGCAGGAAGGCAGGTGCCTTTTCTTTTCTTGGAGAGAGTAAAGGAAGATTTTAAGCGGCGTTATGGAGGAAGGGCTGAGACAAGCATGGCGCACAGCCTTGATAAGGACTACGGGCCAATACTGAGAGACCACATGCAATATTGCATGGACCATCCAGAGGAACTAAGCAAGTTTTTTAAAATAAAGGCTCAGGTTTCAGAAGTGAAAGGAATTATGATGGACAATATTGAGAAGGTTCTGGACCGAGGTGAAAAGATCGAACTTCTTGTAGATAAGACAGAAGGCTTGCAATTTCAGGCTGATAATTTCCAGCGCCAAGGAAGACAGCTTCGGCGGAAGATGTGGCTCCAAAATTTAAAATTCAAATTGATTGTGTTGGGTATCGTACTAGTTATTATGCTTATAATATGGTTATCAGTTTGTAAGGGATTTAGTTGCCATTGA___CATTTAAGTGGTTTTATGTATATAAGACACTGGCATGTTTATGAGTGGAACAACTTTTTGTATATCATGAAGGTGAATAAGAATTAAGAACACAATGAGCTTAATGAATTGATTGGGGAGGAAATGCTCGTATTGAGTCACATTTGATGTATATTATGAAACACATGGGCGATGTTTTTAGATGTTTCTGTTATTGATTAAAATATCCGTTTG

Fln Alignment:

sp_v1.1_unigene58968___MAQQSLIYSFVARGNIVLAEHTSFSGNFSIIAVQCLQKLPSNSNKFTYTCDNHTFNYLVDDGFVFLVVADEAAGRQVPFLFLERVKEDFKRRYGGRAETSMAHSLDKDYGPILRDHMQYCMDHPEELSKFFKIKAQVSEVKGIMMDNIEKVLDRGEKIELLVDKTEGLQFQADNFQRQGRQLRRKMWLQNLKFKXXXXXXXXXXXXXXXXXXCKGFSCH
A9P2K7_______________MAQQSLIYSFVARGNIVLAEHTSFSGNFSIIAVQCLQKLPSNSNKFTYTCDNHTFNYLVDDGFVFLVVSDEAAGRQVPFLFLERVKEDFKRRYGGRAETSMAHSLDKDYGPILRDHMQYCMDHPEELSKFSKIKAQVSEVKGIMMDNIEKVLDRGEKIELLVDKTEGLQFQADNFQRQGRQLRRKMWLQNLKFKIIVLGTVLSIILIIWLSVCKGFSCN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
861	72		27		1.0
916			87	12	0.992554
1336		12		87	0.992554
1339	14	85			0.993533
1341			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain