SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58963

Length: 2375 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene58963
CAATAGTGCGTCGTGACCTTGGCTGTCACTTAATCTTTTTATTCATATGTCTCTCCCTTGCTTTTCGTGCTTTGCATAGCTTTCTGCAGGCTCCTAACGATCGCTGTGTGTAGGAATCGAGATCGAGTTAACGAAGCTGAAGGATAAGAGAAGATGGCCTCTGCTTTGGGCAGTATGACAGCAATTGCCACGTCTACCTCATTGGGCAACATTGGAAAGGAGAAGAAGTTGGGTGCAGTCTTTGATAGTTATGGCAGACAATTGTCTTCTCTTTCAGTTTTTTCACCCATTTCCTTTAATCGCTTAAGCAGAAGACAGACTCTGAGATTACGCAGCAGAGAGCATGTACTTAATACAAGAGCTATGGCAAAGGAGTTGTACTTCAACAAGGATGGCTCAGCGACAAAAAAATTGCAGGCGGGTGTGAACAAGCTTGCTGATCTTGTTGGAGTCACCCTTGGACCGAAGGGCAGAAATGTTGTTTTGGAGAGCAAGTATGGTTCTCCGAAAATAGTGAATGATGGCGTGACAGTAGCTAAGGAGGTTGAATTAGAGGACCCAGTTGAAAATATTGGGGCCAAGTTGGTAAGACAAGCTGCGGCAAAGACAAATGATTTAGCTGGAGATGGAACCACCACATCTGTTGTTCTTGCACAGGGTTTAATAAGTGAAGGTGTAAAGGTTGTTGCAGCAGGTGCAAACCCCATTCAAATTACTAGGGGCATTGACAAGACAGTAAAGGCCCTTGTTTCGGAACTCAAAAGTTTGTCAAAGGAGGTTGAAGACGGTGAATTAGCAGATGTTGCTTCAGTGAGTGCTGGGAATAACTATGAAATAGGAAACATGATAGCGGAGGCTATGAGCAAAGTTGGAAGGAAGGGTGTTGTGACACTCGAAGAAGGAAAAAGTGCAGAAAATAATCTGTATGTTGTGGAGGGAATGCAGTTTGATCGTGGGTATATTTCTCCATACTTTGTGACAGACAGTGAGAAGATGTCTGTGGAGTATGAGAATTGCAAGCTTCTATTGGTTGATAAGAAGATCACAAATGCAAGAGACATGATCACAGTATTAGAAGATGCCATACGTGGGGGGTATCCCATTATGATCATTGCTGAGGATATTGAACAAGAAGCTTTAGCTACTCTTGTTGTCAATAAGCTTCGGGGTGCATTGAAGGTTGCTGCCATAAAAGCTCCCGGATTTGGAGAGAGGAAAAGCCAATACTTGGATGATATTGCTGTATTGACTGGAGGTACTGTCATCAGAGATGAAGTTGGTTTGTCCCTTGATAAAGTTGGAAGTGAAGTTCTGGGTACTGCTGCCAAGGTAGTACTTACCAAGGATTCAACAACGATTGTAGGTGATGGGAGCACTCAGGAAGTTGTTAATAAAAGGGTGGCTCAAATTAGAAGCTTGATTGAGGTTGCAGAACAAGACTATGAAAAAGAGAAATTGAATGAAAGAATTGCCAAGCTCTCTGGCGGAGTTGCAGTTATTCAGGTGGGAGCACAAACAGAGACAGAGTTGAAGGAAAAGAAGTTAAGGGTGGAGGATGCCTTGAATGCAACAAAGGCAGCTGTTGAGGAAGGCATTGTTGTTGGTGGTGGGTGTGCTCTATTGAGGCTTGCTTCGAGGGTTGATGCTATCAGAGATACACTTGAAAACGATGAGCAGAAGGTTGGTGCAGGCATTGTTAAGCGGGCTTTGAGTTACCCATTGAAATTAATTGCGAAGAATGCTGGAGTGAATGGAAGTGTTGTGGTGGAAAAGGTTCTTTCCAGTGATGATCCCAAATTTGGTTACAATGCTGCTACAGGCAAATATGAAGATTTGATGGCAGCTGGAATAATTGATCCAACTAAGGTGGTTAGGTGTTGCTTGGAGCATGCAGCATCCGTTGCGAAGACCTTCCTGACATCGGATGTCGTTGTAGTTGACATCAAGGAACCGGAATCGGCTGCCCCCGCTCCAAACCCCATGGATAACTCAGGTTATGGATACTAGATACAAATACGGCCAATAAAATGAAGAATTCAATTTTATGTTTTTGTTTGGATCCCTTATTGAAGGGGGCGTTTTAATTACACATTGATTGATGTACACTGCAAACATGATAGAAACTATTTTTCAGCTATAGAAGCTGAAAATCGGCGTTTTTAGAAGAGATGGGTAGAGTGTGGTTCGCTGGGATTTATTTGGCAAGTGTTTTCTACACGCAAGCAAATTACGAAATTATGATAGCTGGTGTAAATTGCATTGCCAAATATGTAATGTGGTTCAATTGGTTTTGATGCTCCGTCTCTTTGCACGTGCCACTGAATAGTTTTGTTTGGTTTATGATTCATATAATGGCTGAAACCCCTTTTCTGACC

Ace file of the UniGene sp_v1.1_unigene58963 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	rubisco subunit binding-protein beta subunit, rubb, putative	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	rubisco subunit binding-protein beta	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%
Blast2go	nucleolus	GO:0005730	Cellular Component	93%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	93%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	93%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Chaperonin Cpn60	IPR001844	-	93%
Blast2go	Chaperonin Cpn60/TCP-1	IPR002423	-	93%
Blast2go	Chaperonin Cpn60, conserved site	IPR018370	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV22

Fln msg:

Fln protein: MASALGSMTAIATSTSLGNIGKEKKLGAVFDSYGRQLSSLSVFSPISFNRLSRRQTLRLRSREHVLNTRAMAKELYFNKDGSATKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLISEGVKVVAAGANPIQITRGIDKTVKALVSELKSLSKEVEDGELADVASVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKITNARDMITVLEDAIRGGYPIMIIAEDIEQEALATLVVNKLRGALKVAAIKAPGFGERKSQYLDDIAVLTGGTVIRDEVGLSLDKVGSEVLGTAAKVVLTKDSTTIVGDGSTQEVVNKRVAQIRSLIEVAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCALLRLASRVDAIRDTLENDEQKVGAGIVKRALSYPLKLIAKNAGVNGSVVVEKVLSSDDPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPESAAPAPNPMDNSGYGY*

Protein Length: 619

Fln nts: CAATAGTGCGTCGTGACCTTGGCTGTCACTTAATCTTTTTATTCATATGTCTCTCCCTTGCTTTTCGTGCTTTGCATAGCTTTCTGCAGGCTCCTAACGATCGCTGTGTGTAGGAATCGAGATCGAGTTAACGAAGCTGAAGGATAAGAGAAG_-_ATGGCCTCTGCTTTGGGCAGTATGACAGCAATTGCCACGTCTACCTCATTGGGCAACATTGGAAAGGAGAAGAAGTTGGGTGCAGTCTTTGATAGTTATGGCAGACAATTGTCTTCTCTTTCAGTTTTTTCACCCATTTCCTTTAATCGCTTAAGCAGAAGACAGACTCTGAGATTACGCAGCAGAGAGCATGTACTTAATACAAGAGCTATGGCAAAGGAGTTGTACTTCAACAAGGATGGCTCAGCGACAAAAAAATTGCAGGCGGGTGTGAACAAGCTTGCTGATCTTGTTGGAGTCACCCTTGGACCGAAGGGCAGAAATGTTGTTTTGGAGAGCAAGTATGGTTCTCCGAAAATAGTGAATGATGGCGTGACAGTAGCTAAGGAGGTTGAATTAGAGGACCCAGTTGAAAATATTGGGGCCAAGTTGGTAAGACAAGCTGCGGCAAAGACAAATGATTTAGCTGGAGATGGAACCACCACATCTGTTGTTCTTGCACAGGGTTTAATAAGTGAAGGTGTAAAGGTTGTTGCAGCAGGTGCAAACCCCATTCAAATTACTAGGGGCATTGACAAGACAGTAAAGGCCCTTGTTTCGGAACTCAAAAGTTTGTCAAAGGAGGTTGAAGACGGTGAATTAGCAGATGTTGCTTCAGTGAGTGCTGGGAATAACTATGAAATAGGAAACATGATAGCGGAGGCTATGAGCAAAGTTGGAAGGAAGGGTGTTGTGACACTCGAAGAAGGAAAAAGTGCAGAAAATAATCTGTATGTTGTGGAGGGAATGCAGTTTGATCGTGGGTATATTTCTCCATACTTTGTGACAGACAGTGAGAAGATGTCTGTGGAGTATGAGAATTGCAAGCTTCTATTGGTTGATAAGAAGATCACAAATGCAAGAGACATGATCACAGTATTAGAAGATGCCATACGTGGGGGGTATCCCATTATGATCATTGCTGAGGATATTGAACAAGAAGCTTTAGCTACTCTTGTTGTCAATAAGCTTCGGGGTGCATTGAAGGTTGCTGCCATAAAAGCTCCCGGATTTGGAGAGAGGAAAAGCCAATACTTGGATGATATTGCTGTATTGACTGGAGGTACTGTCATCAGAGATGAAGTTGGTTTGTCCCTTGATAAAGTTGGAAGTGAAGTTCTGGGTACTGCTGCCAAGGTAGTACTTACCAAGGATTCAACAACGATTGTAGGTGATGGGAGCACTCAGGAAGTTGTTAATAAAAGGGTGGCTCAAATTAGAAGCTTGATTGAGGTTGCAGAACAAGACTATGAAAAAGAGAAATTGAATGAAAGAATTGCCAAGCTCTCTGGCGGAGTTGCAGTTATTCAGGTGGGAGCACAAACAGAGACAGAGTTGAAGGAAAAGAAGTTAAGGGTGGAGGATGCCTTGAATGCAACAAAGGCAGCTGTTGAGGAAGGCATTGTTGTTGGTGGTGGGTGTGCTCTATTGAGGCTTGCTTCGAGGGTTGATGCTATCAGAGATACACTTGAAAACGATGAGCAGAAGGTTGGTGCAGGCATTGTTAAGCGGGCTTTGAGTTACCCATTGAAATTAATTGCGAAGAATGCTGGAGTGAATGGAAGTGTTGTGGTGGAAAAGGTTCTTTCCAGTGATGATCCCAAATTTGGTTACAATGCTGCTACAGGCAAATATGAAGATTTGATGGCAGCTGGAATAATTGATCCAACTAAGGTGGTTAGGTGTTGCTTGGAGCATGCAGCATCCGTTGCGAAGACCTTCCTGACATCGGATGTCGTTGTAGTTGACATCAAGGAACCGGAATCGGCTGCCCCCGCTCCAAACCCCATGGATAACTCAGGTTATGGATACTAG___ATACAAATACGGCCAATAAAATGAAGAATTCAATTTTATGTTTTTGTTTGGATCCCTTATTGAAGGGGGCGTTTTAATTACACATTGATTGATGTACACTGCAAACATGATAGAAACTATTTTTCAGCTATAGAAGCTGAAAATCGGCGTTTTTAGAAGAGATGGGTAGAGTGTGGTTCGCTGGGATTTATTTGGCAAGTGTTTTCTACACGCAAGCAAATTACGAAATTATGATAGCTGGTGTAAATTGCATTGCCAAATATGTAATGTGGTTCAATTGGTTTTGATGCTCCGTCTCTTTGCACGTGCCACTGAATAGTTTTGTTTGGTTTATGATTCATATAATGGCTGAAACCCCTTTTCTGACC

Fln Alignment:

sp_v1.1_unigene58963___MASALGSMTAIATSTSLGNIGKEKKLGAVFDSYG-RQLSSLSVFSPISFNXXXXXXXXXXXXREHVLNTRAMAKELYFNKDGSATKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLISEGVKVVAAGANPIQITRGIDKTVKALVSELKSLSKEVEDGELADVASVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKITNARDMITVLEDAIRGGYPIMIIAEDIEQEALATLVVNKLRGALKVAAIKAPGFGERKSQYLDDIAVLTGGTVIRDEVGLSLDKVGSEVLGTAAKVVLTKDSTTIVGDGSTQEVVNKRVAQIRSLIEVAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXGCALLRLASRVDAIRDTLENDEQKVGAGIVKRALSYPLKLIAKNAGVNGSVVVEKVLSSDDPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPESAAPAPNPMDNSGYGY
A9NV22_______________MASALGSMTAVATCASLGNIGKEKKLGAVSDSYGVRQLSSLSAFSPISFNRLSRRQTMRLRNREQVVNTRAMAKELYFNKDGSATKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIGEGVKVVAAGANPIQITRGIEKTVKALVSELKSFSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKITNARDMITVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGALKVAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLQLDKVGSEVLGTAAKVVLTKDSTTIVGDGSTQEAVNKRVAQIRSLIEVAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCALLRLASKVDAIRDTLENDEQKVGAGIVKRALSYPLKLIAKNAGVNGSVVVEKVLSSDDPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPEPAA-SPNPMDNSGYGY

SNPs (tot: 92)

Position	A %	C %	G %	T %	Probability
884	94			5	0.997984
1059		88		11	0.999937
1401	10			90	0.90298
1402		10	90		0.90298
1405	10			90	0.90298
1411	90	10			0.90298
1412	90	10			0.90298
1413	90	10			0.90298
1414	10		90		0.90298
1419	11		88		0.991528
1421		11	88		0.991528
1428	88	11			0.991528
1434	11		88		0.991528
1451		12		87	0.992554
1455		87		12	0.992554
1467			14	85	0.993533
1469			14	85	0.993533
1471			14	85	0.993533
1472	14			85	0.993533
1474	14			85	0.993533
1480	14			85	0.993533
1481			14	85	0.993533
1482			14	85	0.993533
1486			14	85	0.993533
1487	14			85	0.993533
1530		81		18	0.999994
1531		81	18		0.999994
1532	18			81	0.999994
1534	18	81			0.999994
1537		18		81	0.999994
1539	18			81	0.999994
1540		81	18		0.999994
1541	81		18		0.999994
1543	20	10			0.999999
1544	10		90		0.90298
1545	10	10		80	0.959698
1546		10	10	80	0.959698
1547	10		10	80	0.959698
1548	11	88			0.991528
1549		88	11		0.991528
1615		28		71	1.0
1616		28		71	1.0
1617		28	71		1.0
1619		71		28	1.0
1676	14			85	0.993533
1710		14		85	0.993533
1711	85	14			0.993533
1714		85		14	0.993533
1866	83	16			0.994512
2270	96	3			0.993037
2271		3		96	0.993037
2319		10	89		1.0
2321	89	10			1.0
2322	91	8			1.0
2324			91	8	1.0
2326	90	3	6		0.996531
2328		21	78		1.0
2329	78	21			1.0
2330	84	15			1.0
2331	87	6		6	0.992016
2332	89			10	1.0
2333			92	7	0.999664
2336	86		13		1.0
2339			86	13	1.0
2342		13	86		1.0
2345	86	13			1.0
2346		69		30	1.0
2348	13			86	1.0
2349	86		13		1.0
2352		17	82		1.0
2354	71	19	9		1.0
2355		4	14	80	1.0
2356	47	14			1.0
2357	57	33	9		1.0
2358	57	19	14	9	1.0
2359	58	41			1.0
2360	88	11			0.999952
2361		5	58	11	1.0
2362	86	13			0.999973
2363		13		86	0.999973
2364	33		16	41	1.0
2365	58		41		1.0
2366	50		33		1.0
2369	25	8	66		1.0
2370	66		25	8	1.0
2373	8		58		1.0
2375		54	45		1.0
2376	70		30		1.0
2377	60	10	30		1.0
2383	70			30	1.0
2384		70		30	1.0
2388		70		30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain