SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58951

Length: 904 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58951

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RT88_RICCO	-	-	2.0e-21	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	ring-h2 finger protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	0.0	67%
Blast2go	defense response	GO:0006952	Biological Process	0.0	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWQ5

Fln msg: Overlapping hits, possible frame ERROR between 379 and 363, your sequence is shorter than subject: 225 - 321

Fln protein: NHKEGLECAVCLCEFEENEKARLLPKCHHSFHIECIDMWFHSHSTCPLCRASAQPDTPADSVVVLIDDVAATSGTASETDLQVRLPTVSEGNASTSMERDSNIDLCPSCRHDEVLPSPTYxxxxxxxWQRVSSMSNSDQATTSTSGKTLEKITIDIPRRVGSFSSPRQFSSDGQQEFSPCGQSLKSPGIRLRSLKKLLSADKKAVPPSPDAGRNIHLEPEGPSS*

Protein Length: 226

Fln nts: GAATCACAAAGAGGGGCTCGAGTGCGCCGTCTGTTTGTGCGAATTTGAAGAGAACGAGAAGGCGAGACTGCTCCCCAAATGCCACCACAGTTTTCACATCGAGTGCATCGACATGTGGTTCCACTCGCACTCGACTTGCCCGCTGTGTCGAGCCAGCGCCCAGCCCGACACGCCCGCCGATTCCGTCGTGGTCCTAATAGACGACGTGGCGGCCACATCGGGGACTGCCTCCGAAACCGACTTGCAGGTGCGACTCCCCACCGTTTCAGAGGGCAACGCATCGACCTCCATGGAACGCGACAGCAACATCGACCTTTGCCCTTCGTGCAGGCACGACGAGGTTCTCCCGTCTCCGACTTATxxxxxxxxxxxxxxxxxxxxxTGGCAGAGGGTTTCTTCCATGTCAAACTCCGACCAAGCGACGACATCGACTTCTGGTAAAACCCTCGAAAAAATCACCATCGACATACCGCGAAGAGTCGGCAGTTTTTCTTCTCCCAGGCAATTCTCGAGCGATGGTCAGCAGGAGTTTTCGCCGTGTGGGCAATCTCTCAAATCCCCTGGCATTCGTCTTCGTTCACTGAAGAAACTACTAAGCGCAGACAAGAAGGCCGTTCCACCTAGTCCAGATGCTGGTAGAAATATTCACCTTGAGCCAGAGGGTCCATCATCATAGTTGAAAGCTAGGGTTTATTGATTTCTACTGCAACGACCATGAGAGTCATTTCGGAGGGATTGGATAACTTGGGTCACTTGTCGTTTTTGACAATTCACAGATGAGATACCTCTCCTAGGAATAAGAATCACCAGCTTCTCCTGGGCAGAAGAATCTAACAACGGTTAAAAGGGCCTTGAGGCTCTCAGCTTCGAGAGTCAAAGTTCGGGGTTCATAGTTGCCCTTTATTC

Fln Alignment:

sp_v1.1_unigene58951___NHKEGLECAVCLCEFEENEKARLLPKCHHSFHIECIDMWFHSHSTCPLCRASAQPDTPADSVVVLIDDVAATSGTASETDLQVRLPTVSEGNASTSMERDSNIDLCPSCRHDEVLPSPTYxxxxxxW---QRVSSMSN---SDQATTSTSGKTLEKITIDIPRRVGSFSSPRQFSSDGQQEFSPCGQSLKSPGIXXXXXXXXXXXXXXXVPPSPDAGRNIHLEPEGP
A9NWQ5_______________NYKDGLECAVCLCEFESNEKGRLLPKCNHSFHIECIDMWFQSHSTCPLCRASAQPDTPADSVVIVVEE--AASGSASEMEQQV--SAVSESDASISREPDSDINLCHSCRHDEGLPSPTYxxxxxxWGTQNRVDSVSNPAFSDQGMTSTSRKTLDKIIIEIPRRVDSFSSPRLLSSDDQQAFSP-SQSLKSPSTRLRSLKRLLSRDKRVVPQSPDAGRNFHIEQESP

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
555	83		16		0.994519
556	83			16	0.994519
557			16	83	0.994517
558	16	83			0.994523
561		80		20	0.995493
565		80		20	0.995493
566	80			20	0.995493
567			20	80	0.995493
571	16			83	0.994523
574		20		80	0.995493
575	20	80			0.995493
593		60		40	1.0
667	88		11		0.92373
670	88		11		0.92373
672		88	11		0.92373
675	88	11			0.92373
676		12	87		0.992556
680	83		16		0.994512
681	83	16			0.994512
682	83			16	0.994512
684		83		16	0.994512
685		16		83	0.994512
687		16	83		0.994512
688			83	16	0.994512
689		16	83		0.994512
690	16			83	0.994512
763		40		60	1.0
819	40		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain