SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58927

Length: 1374 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58927

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactinol synthase n=3 Tax=Brassica napus RepID=B6ZBV9_BRANA	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	galactinol synthase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQN6

Fln msg:

Fln protein: MNPENSPVDQFFSAKAEAAKKNCRAYVTFLAGCGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEDHRLQLRRQGCIVRQIQPIHPPENQVQFSMPYYVLNYSKLRIWEFEEYSKMVYLDADIQVFDNIDHLFDMPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPEKVSWPVELGQRPSPYFNAGMFVSEPSQLTFDCLLETLMATVPTPFAEQDFLNMFFEKIYKPIPLVYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRYSGKEENMKREDIKMLVHKWWDIFNDPSLDHSGSGDITIPDPISEADGKSNDLQRVAANSFLAAMPTNPNIMPAPPAA*

Protein Length: 348

Fln nts: CGTCGTGACCTTGGCTGTGGATTGGGTACACTCACACATTCGTCTTCTGCAAATTGATTCTTTATCAAGAGATTATTGAATTCCAGCATACGTACTATCGATTCTCCACTTCTCACC_-_ATGAATCCAGAAAATTCTCCTGTAGATCAGTTCTTCAGTGCAAAGGCTGAGGCGGCCAAGAAGAATTGCAGAGCGTACGTGACTTTCTTGGCCGGATGTGGCGATTATGTGAAAGGCGTGGTCGGTCTTGCAAAGGGTCTCCGCAAGGTGAAGAGCGCATATCCTCTCGTCGTTGCTGTGTTGCCCGATGTTCCAGAGGATCATCGCCTGCAATTGCGAAGACAGGGTTGTATTGTTCGCCAGATTCAACCCATCCATCCCCCGGAGAATCAAGTGCAGTTTTCAATGCCTTACTATGTCCTTAACTACTCCAAACTCCGTATTTGGGAGTTTGAGGAGTACAGCAAGATGGTATATCTGGACGCAGACATCCAAGTCTTTGACAACATTGACCATCTCTTTGACATGCCGGATGGATATTTCTATGCTGTCATGGATTGCTTCTGCGAGAAGACATGGAGTCACACTCCGCAGTACAAGATCGGATACTGCCAGCAGTGTCCAGAGAAGGTGTCATGGCCCGTTGAATTAGGGCAACGGCCCTCTCCATACTTCAACGCTGGAATGTTTGTTTCTGAGCCGAGTCAGCTGACCTTCGACTGCCTTTTGGAAACTCTGATGGCTACTGTGCCAACGCCCTTCGCAGAACAGGATTTCTTGAACATGTTTTTTGAAAAGATATACAAACCCATCCCTCTGGTGTACAATCTGGTTCTAGCCATGATGTGGCGGCATCCCCAGAACGTGGACTTGGACACTGTCAAAGTTGTTCACTACTGTGCTGCTGGATCGAAGCCGTGGAGGTACAGTGGGAAGGAGGAAAATATGAAGAGGGAAGATATAAAGATGTTGGTTCACAAATGGTGGGACATATTCAATGACCCCTCTCTCGATCACTCGGGATCAGGAGATATTACAATTCCCGACCCAATTTCAGAAGCGGACGGAAAATCAAATGATCTGCAACGAGTGGCTGCTAATTCATTCCTTGCTGCGATGCCAACAAACCCCAACATAATGCCTGCACCGCCTGCAGCTTAA___GAGATTTCAAATTTCCAGAAGTCGCCTATAGCATAAGATCTCTGTATATATTATAAACTACTGGTGGTAGTGGGGACAATTTGTATATCGTTGGAAGACTGACGATTTTGCCCGGCAGAAGTGGGGACAATTTGTATATTGTATGGAAGACCGACGATTTTCCCGTTGTATAGACGGTTATTGATTGTAAACTAATTCAATTAATTAATCTTTGTG

Fln Alignment:

sp_v1.1_unigene58927___MNPENSPVDQFFSAKAEAAKKNCRAYVTFLAGCGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEDHRLQLRRQGCIVRQIQPIHPPENQVQFSMPYYVLNYSKLRIWEFEEYSKMVYLDADIQVFDNIDHLFDMPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPEKVSWPVELGQRPSPYFNAGMFVSEPSQLTFDCLLETLMATVPTPFAEQDFLNMFFEKIYKPIPLVYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRYSGKEENMKREDIKMLVHKWWDIFNDPSLDHSGSGDITIPDPISEADGKSNDLQRVAANSFL
A9NQN6_______________MNPEISPVDLLFGAKAAAAKKNCRAYVTFLAGCGDYVKGVVGLAKGLRNVKSAYPLVVAVLADVPEDHRLQLRRQGCIVRQIQPIDPPDNEVQFSMPYYVLNYSKLRIWEFEEYSKMVYLDADIQVFDNIDHLFDLRDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPEKVSWPIELGQRPSLYFNAGMFVFEPSQLTFDCLLETLMATVPTPFAEQDFLNMFFEKIYKPIPLAYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRFSGKEENMEREDIKTLVQKWWDIYNDPSLDHLGSGD-TVPDPISEADGKSNDLQQVAANSFL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
725		80		20	0.995493
922		14	85		0.993533
923	85		14		0.993533
927	85			14	0.993533
928	85		14		0.993533
929	14		85		0.993533
932			85	14	0.993533
936	85	14			0.993533
937			85	14	0.993533
943		14	85		0.993533
946		16	83		0.994512
947	16		83		0.994512
989		40		60	1.0
1058	18	81			0.999994
1061		80		20	0.999996
1073	80		20		0.999996
1075		90		10	0.90298
1079		80		20	0.999996
1099	88	11			0.923564
1114	75		25		1.0
1118	77		11		0.968132
1121	25	75			1.0
1125			75	25	1.0
1226			33	66	0.997476
1228	66		33		0.997476
1234		33		66	0.997476
1240		33		66	0.997471
1241	33		66		0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain