SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58922

Length: 1372 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58922

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PIP2;8; PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel; K09872 aquaporin PIP	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	aquaporin	-	-	90%

Source	InterPros	Term	Type	Identity
Blast2go	Major intrinsic protein	IPR000425	-	90%
Blast2go	Aquaporin	IPR012269	-	90%
Blast2go	Major intrinsic protein, conserved site	IPR022357	-	90%
Blast2go	Aquaporin-like	IPR023271	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPE3

Fln msg:

Fln protein: MTKEERKELEQQGFPSKDYTDPPPAALIETSEFKLWSFYRALIAEFTATLLFLYITIATVIGHSRNSANCGSVGVLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGAICGTGLVKAFQKSFYDRYGGGANYVHHGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWNDHWIFWVGPFVGAALASAYHQYILRAAAIKALGSFRSNANV*

Protein Length: 284

Fln nts: ATGGGGAAGCTTAACAAGGGCAGCCATCCATTCACACATTGCCTTGTAACATCTGAGTTGAGTGTCTCTCACCTCCCCTGCAATTCTGAGCGTCTTTGAGCTCATTAGTAGCAGCGGCAGTTCAGTACCAGCCATC_-_ATGACAAAGGAAGAAAGGAAGGAATTGGAGCAGCAGGGATTTCCATCAAAGGACTACACAGACCCACCTCCTGCTGCTCTCATTGAGACTAGTGAATTCAAGCTCTGGTCATTCTACAGGGCTCTGATAGCAGAATTCACTGCCACATTGCTGTTTCTCTATATCACTATTGCTACTGTGATTGGGCACTCCAGGAATTCAGCAAACTGTGGGAGCGTTGGGGTGTTGGGTATTGCCTGGTCCTTTGGGGGCATGATTTTCGTTTTGGTTTACTGCACTGCTGGTATTTCAGGTGGGCATATCAATCCTGCTGTCACTTTTGGCCTGTTTTTAGCAAGGAAGGTTTCCTTGCCAAGGGCTATTTTGTATATGATAGCCCAGTGTCTAGGGGCCATTTGTGGAACTGGATTGGTTAAGGCCTTCCAGAAGAGTTTCTATGATAGATATGGAGGTGGAGCTAACTACGTGCATCATGGATACACCAAAGGTGTGGGTTTGGCTGCTGAAATCATAGGCACCTTCGTTCTGGTCTACACTGTGTTCTCTGCAACCGATCCCAAGAGAAGTGCTAGAGACTCCCATGTTCCTGTCTTGGCCCCATTGCCTATTGGATTTGCTGTTTTCATGGTGCACTTGGCCACCATTCCCATCACTGGGACTGGCATCAATCCTGCGAGGAGCTTCGGAGCAGCAGTGATTTATGGCCACAAACAATCTTGGAATGATCATTGGATTTTCTGGGTAGGTCCTTTTGTTGGAGCTGCATTAGCTTCTGCCTACCACCAGTACATTCTGAGAGCAGCAGCCATCAAGGCCTTGGGATCATTCCGAAGCAACGCAAATGTGTAA___TTAGGCAACAGTGGTTGTAGGTAGCAGTCGTCTGTCTCAAATCTGTAGGTTTACAGTAGATTAGTAATTATTATGGATTATTATGTCTAACACTGGATGAGACCAAATAGCAGCTCAGTGAGAACTGATTTGTAAAGGGTAGCTTCTTCTCTCAGTGCCTTGGTCAGAGGTTGGATTTTTGCCTTTTAAGAGGCATATAGGTTGAGGGAATCTGGCTTGAATCCAGTGCTGTTGCAGAAGTCATAAGAATGCTTGTAATTTCTGTATAGGTTAGAAGTTGTGCATGAATGAACTCAGAAATATGCATAGTACAAGTTACAAGGTAAGAGGACAAATTCAACAGATTGATCTTACAAAATAAAATAATAAAGCAAACATTTCTCTAAG

Fln Alignment:

sp_v1.1_unigene58922___MTKEERKELEQQGFPSKDYTDPPPAALIETSEFKLWSFYRALIAEFTATLLFLYITIATVIGHSRNSANCGSVGVLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGAICGTGLVKAFQKSFYDRYGGGANYVHHGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWNDHWIFWVGPFVGAALASAYHQYILRAAAIKALGSFRSNANV
A9NPE3_______________MTKEERRESEQQGFAPKDYTDPPPAALIETSEFKLWSFYRALIAEFVATLLFLYITIATVIGHSRTSTNCGSVGVLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGAICGTGLVKAFQKSFYDRYGGGANYVHHGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWDDHWIFWVGPFAGAALAAAYHQYILRAAAIKALGSFRSNANV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1252		6	93		0.999264
1309	92			7	0.999532
1310			92	7	0.999532
1311		7	92		0.999532
1372		10		90	0.90298
1373	11		33		1.0
1374		50	50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain