SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58914

Length: 1783 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58914

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	actin, putative; K05692 actin beta/gamma 1	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	actin	-	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNW2

Fln msg:

Fln protein: MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

Protein Length: 379

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGAGTTTAATTTGGAGCGAACTTGGGGTGGAGGGTATTTTAACGTCGTGACCTTGGCTGTCACTCAGTCTCTCAGTGTAAGCATAGCATTTCATTTCTCGGTGAAGGAAAGGAAAGAAGGAAAGAGCTCAGACGACGGGCACTGCACGCCGTCAATTTTCGTCTCTATTTCGCGTTTGCAGTTATCTCGCAATTTAATTGAAG_-_ATGGCTGACGCAGAGGATATCCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGCCCTCGTCATACTGGAGTCATGGTGGGGATGGGGCAGAAGGATGCATATGTAGGTGACGAGGCTCAATCTAAAAGAGGTATTCTTACTTTGAAGTATCCTATTGAGCATGGGATTGTCACCAACTGGGATGATATGGAGAAGATTTGGCATCATACCTTTTACAATGAGTTACGAGTTGCTCCAGAAGAACACCCTATTCTCCTCACCGAAGCACCTTTGAATCCCAAGGCAAACAGAGAGAAGATGACTCAGATTATGTTTGAGACATTCAATACACCTGCAATGTATGTTGCCATTCAAGCTGTTCTTTCTCTTTATGCAAGTGGTCGAACAACTGGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTTCCCATATATGAAGGATATGCTCTTCCACATGCTATTCTCAGGCTAGATCTTGCTGGTCGGGATCTGACTGATGCTTTGATGAAGATCCTGACTGAAAGAGGTTATTCATTCACCACTACGGCAGAACGTGAAATTGTTCGTGATATGAAAGAGAAACTTGCTTATGTAGCCCTTGACTACGAGCAGGAGCTTGAGACAGCCAAGACGAGTTCCTCCCTGGAAAAGAGTTACGAGCTTCCTGATGGGCAAGTAATCACCATTGGTGCAGAGCGTTTCAGATGCCCAGAAGTCTTGTTCCAACCTTCGCTAATTGGAATGGAAGCTGCTGGCATTCATGAGACGACATACAATTCCATCATGAAGTGTGACGTGGATATCAGAAAGGATCTGTATGGAAATATTGTTCTCAGTGGAGGATCTACCATGTTTCCTGGTATTGCCGATCGTATGAGCAGGGAGATTACTGCCCTGGCCCCAAGTAGTATGAAGATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATTGGAGGATCAATCTTGGCATCTCTGAGTACATTCCAACAGATGTGGATTGCTAAGGCTGAGTATGATGAATCTGGTCCGTCAATTGTTCACAGAAAGTGTTTCTAA___TTTTCAGTGGCTTAGTAGTTTTTAGAGTTCCTAAGCAGTATTGCAGTTATTATGAAGTAGGTGATCACGGGTATATTATATTCAGCTATTTCGATGCAGTTAGAGTATATAGTCTTGTCATGGTAGAGATGATAGAGGTACATTTTTGCATGGTTGCGTCCTTGTTTGTTGAATGGCAAGATTTTAGCGCGAAATCTGTCGCCGATTTTTTTATTTATTTTGTACTGTGTAATAGCGTGCATGGAGGATGCATATTTTGAATCTCTCCAATGTCATAGTGCATGAGAAACTGACGGTCTTACAGTTCATAATGTACTGCTCAATCACCTATTATTATTTTATGGTTTCATGTTTGAATCTATTTTCAACTGTGCCGTTAATATTTTTTTATTGCAGTGCAACTCTGAAACACTTTTGT

Fln Alignment:

sp_v1.1_unigene58914___MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
B8LNW2_______________MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYDESGPSIVHRKCF

SNPs (tot: 5)

Position	A %	G %	T %	Probability
588	11	88		0.923564
1342	16	83		0.994512
1500	90	9		0.999842
1675	20		80	0.995493
1690	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain