SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58912

Length: 1075 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58912

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L6 n=3 Tax=Picea sitchensis RepID=A9NLS7_PICSI	-	-	90%
FL-Next	sp=60S ribosomal protein L6; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	60s ribosomal protein l6	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLS7

Fln msg:

Fln protein: MAKSGQPRVSRNKDLIRGVGRFSRSKMYHKRGIWAIKEKNGGSFPRHDKQLPQPKAVEKAPKFYPAEDVPKPLTNKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLITGPFKLNGVPIRRVNQAYVIATSTKIDISTVDVNKFTDKYFAKEVIRKKKTESEFFEAEKEDKKSLPVEKKEDQKVLDSVLLQILESVPDLKQYLSARFSLRSGMKPHELAF*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCTGTCCATGGGAGATGGGTATGTCGAGAACGGAGCAGCTTGGGGAGAGATCGCAGCTGGGGGAGAGACGCAGGAAGAGGAACTGAAGAGGAAGAGAG_-_ATGGCGAAGTCTGGGCAGCCCAGGGTTTCAAGAAACAAAGACCTCATAAGAGGAGTTGGCCGTTTTTCCAGATCGAAAATGTATCACAAGAGAGGTATTTGGGCCATCAAGGAGAAGAACGGGGGCAGCTTCCCACGGCACGATAAACAACTCCCACAGCCGAAGGCTGTAGAAAAGGCTCCTAAATTTTATCCTGCGGAGGACGTGCCCAAGCCCCTCACTAACAAGAGGAAGCCTAAGCCCACGAAGCTCAGGTCCAGCATTACTCCTGGAACTGTTCTGATCCTTCTGGCTGGACGCTTCAAAGGGAAGCGTGTTGTCTTCCTAAAGCAGCTGGAGTCTGGTCTTTTGCTTATTACTGGCCCCTTTAAATTGAATGGTGTTCCAATCAGAAGGGTAAATCAAGCATATGTCATTGCAACCTCCACCAAGATTGATATAAGCACTGTTGATGTGAACAAATTCACAGACAAGTACTTTGCAAAGGAGGTTATTAGGAAGAAGAAGACCGAGAGTGAATTTTTTGAGGCAGAGAAAGAGGATAAAAAGTCCTTGCCTGTGGAGAAAAAGGAGGATCAGAAAGTTCTGGATTCTGTATTGTTGCAGATTCTAGAATCTGTTCCAGATTTGAAGCAGTATTTGTCTGCAAGATTTAGTTTGAGGTCAGGAATGAAGCCACATGAGCTTGCTTTTTAA___AAAACCGGCAAATCCAGAATTGGGGGCAGTTTGTACTGAACCACTCAATCAAAGGTGTTGGCTAGTGGAACTTTTATATATTTAGAAAATTTTGTTTCATTTCATTTGAAGCACACTACTAATTTTCAAGAGCGAGGGTTCTGTTAGGAGTCCCGTGTATTGTAGCTTTTATATTTGGGATTTATTGGTTTTGTTTACTCTTGTTTTTCTTTGACTTGTGATGGAAATCCATTTTCGTTTCGAATGAAATTTATATCCTTTTCCAGTT

Fln Alignment:

sp_v1.1_unigene58912___MAKSGQPRVSRNKDLIRGVGRFSRSKMYHKRGIWAIKEKNGGSFPRHDKQLPQPKAVEKAPKFYPAEDVPKPLTNKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLITGPFKLNGVPIRRVNQAYVIATSTKIDISTVDVNKFTDKYFAKEVIRKKKTESEFFEAEKEDKKSLPVEKKEDQKVLDSVLLQILESVPDLKQYLSARFSLRSGMKPHELAF
A9NLS7_______________MAKSEKPRVSRNKELIRGVGRFSRSKMYHKRGIWALKEKNGGSFPRHDKQPPQAKAVEKAPKFYPADDEPKPLINKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLVTGPFKLNGVPIRRVNQAYVIATSTKIDISTVDASKFTDKYFEKEVVRKKKTESEFFEAEKEDKKTLPTEKKEDQKVLDAVVLQAVESVPDLNQYLSSRFSLRSGMKPHELVF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
446	83		2		1.0
782	91			8	1.0
804	1			94	0.95615
886	95		4		0.997218
991	6		93		0.999264
993	6		93		0.999364
994	6			93	0.999364
995	6	93			0.999364
996	6	93			0.999364
997	6	93			0.999453
1054		16		83	0.994523

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain