SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58892

Length: 672 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58892

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PR4; PR4 (PATHOGENESIS-RELATED 4); chitin binding	-	-	3.0e-33	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	pr-4 type protein	-	-	3.79623e-37	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	systemic acquired resistance	GO:0009627	Biological Process	3.79623e-37	67%
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	3.79623e-37	67%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	3.79623e-37	67%
Blast2go	response to herbivore	GO:0080027	Biological Process	3.79623e-37	67%
Blast2go	response to virus	GO:0009615	Biological Process	3.79623e-37	67%
Blast2go	response to salt stress	GO:0009651	Biological Process	3.79623e-37	67%
Blast2go	protein binding	GO:0005515	Molecular Function	3.79623e-37	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Barwin	IPR001153	-	3.79623e-37	67%
Blast2go	Barwin-related endoglucanase	IPR009009	-	3.79623e-37	67%
Blast2go	Barwin-like endoglucanase	IPR014733	-	3.79623e-37	67%
Blast2go	Barwin, conserved site	IPR018226	-	3.79623e-37	67%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
89	33	66			0.997452
285		66		33	0.997452
286	66	33			0.997452
288		66		33	0.997452
289		66	33		0.997452
291		33	66		0.997452
292		33		66	0.997452
293	66			33	0.997452
294		66		33	0.997452
295	66		33		0.997452
296	66		33		0.997452
297	66	33			0.997452
300		33	66		0.997452
304		33	66		0.997452
305	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain