SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58885

Length: 1532 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58885

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L24, putative; K02896 large subunit ribosomal protein L24e	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	82%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH8

Fln msg:

Fln protein: MKLEKCWYCSSTIYPGHGIQFVRNDCKIFQFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRISREAKLWENRMKGNKAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKEKIMRVKVSISKQQKEIVDDRI*

Protein Length: 175

Fln nts: CGTCGTGACCTTGGCTGTCATTGGTTTTTTCAGAAAACCCAACATCCTGACTCCTAACTATGGTTTTTGGTTTCCTGCAGCCTTCAAGAATGGAAGAGCCATAGGTGACAGAGGAAGCGATCAAAACACAGTTTCTTACAATGGTCGTGACGATGTATGTATGGGATAAAATTAACGTATTTGATTTATTTGTAGCACAGGCGTACTCAGTGTGGCTGTACTCAGTGTGGCTTTACCTGGCGTCCTCGCATCACGCTTTAATGCTGCCGTGCTTTCTGTTGCAACCCTCGCATCACGCTTTAATGCTGCCGTGCTTTCTGTTGCAACCCTCCGCATCACGCTTTAATGCTGCGCTGCGTCTTCGTTTGCTTAACATCTCACGAACGAGTCTCGGAGCTGGAAATCGTGAGCCGGAGCTGTTGTTTAGAAAACCTCAACACAACATCATTTCTTCCAGCTTAGACACAGGAAGGGTTAGGACTAGCGCGAGGAGCACAGCCAAGCA_-_ATGAAGCTCGAGAAGTGTTGGTACTGTTCGTCTACAATTTATCCCGGTCATGGGATCCAATTCGTGCGCAATGATTGCAAGATATTCCAGTTTTGCCGTTCCAAATGTCATAAGAATTTCAAAATGAAACGTAACCCTCGAAAGGTGAAGTGGACTAAAGCATACAGAAAGCTACACGGAAAAGACCTTACTAAGGACACAACGTTTGAGTTTGAGAGAAGAAGAAACAGGCCCGAGAGATACGATAGAAATGTTGTTCAAAATACCTTGAAGGCCATCAAGAAGATTGAGGAAGTTCGTATTAGCAGGGAGGCTAAATTATGGGAGAACAGGATGAAGGGCAATAAAGCTAAACAAATGAAAGAGGATACTGGAGAATTGGAGCAGGGCATTCATTTGGTGAAAGCTCCTCTTGCCATGCAAGAAGAACCTGGGCTTGCTTTGCCAAGAAAGGAAAAGATTATGAGAGTTAAAGTTTCCATCTCTAAGCAACAAAAAGAGATTGTGGATGACAGAATATAG___GCGGGCATAATCATCCATACTTATGGGGAGATTGTGGATGTTAAGATTTATTATTATCCACTCCAGTTCCTCGACAGTATTCATTGGGAAAGTGTACATAATTTTACTGGCCACTCTCTCTTCATTTTCCAACTGTAGTTTAACCATGTTCTGTCAGTATGCCCCTGGCTGCTGATCATGTTGCCAAGGTGCTGCATCCCATTTTGCCTCCGTTGCCTTTATTCTCAACTTATTAGGGCATCTGTGTTAATATTTTCACAATGTCTACATTGGGCACAACATCCATGGCTGTCTGTAGCCTGGCATGCAACACATGGGCAATTTTTAACATTCTTTCTTTCTTGTCTATTTGGTGTTTCGAACTCCCTTTCACAATACCAATGCTTGTAGATTTTGCACCTTCCCTATTTTTAAATTCCTTCTGTTAGTATTAGTTGGATTTTACCAGTGGTAGTTGGATTTTGCCAGCTAAAACGCTATCCGAAAATGTTTGTAAAACTTGACG

Fln Alignment:

sp_v1.1_unigene58885___MKLEKCWYCSSTIYPGHGIQFVRNDCKIFQFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKXXXXXXXXXXXXXXXXXXXVVQNTLKAIKKIEEVRISREAKLWENRMKGNKAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKEKIMRVKVSISKQQKE
A9NKH8_______________MRLEKCWFCSSTIYPGHGIQYVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKELTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRVSREAKLWENRMKGNKAKQIKEDARELEQGIHLIKAPLAMQEEPGLTLPTKAEKMKVKVSISKQQKE

SNPs (tot: 3)

Position	A %	C %	G %	Probability
1013	85		14	0.993533
1015		85	14	0.993533
1234	85		14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain