SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58842

Length: 1609 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58842 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj\|BAD15406.1\| KH domain-containing protein-like [Oryza sativa Japonica Group] gb\|EAY84850.1\| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb\|EAZ22072.1\| hypothetica	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	66%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	66%
Blast2go	K Homology domain	IPR004087	-	66%
Blast2go	K Homology domain, type 1	IPR004088	-	66%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN83

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure

Fln protein: MDPFGHARKKARSETFLNENGGLFNPHESNMFGDGNRFKAGGMKFALQPEKESLPTGLGSKSKACTKFFSLSGCPYGEGCHFQHYVPGGVNPVTQIGTLGTALGAASKKPTGLLAAEPTLNASNYKTRLCSNFGTDTGCRFGDKCHFAHGEKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRKLGALVRQLIMHTSATLPAKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDNSK*

Protein Length: 332

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTAACAATTGTGACTTGCGATCCATGGGGATAGACACTTACTCTATCGCTGTCTCACCCCCGAAACCTAGGTCTACATTGCGAGAGTTACGCGACAGCTTGTTTCTACACTGTAACTGGCATTGATATTGGGCGGTCATCTGTAAGATTTTTTTTTGAGTTGTCTGTGTCTTTCTGGGTTTTGTTTAAGGGTTTTTCGCGCGGTTTGAGCTATTGGGTTGGAGATATCGAGCTTAGACAAGGGTTCTGAGAAGGTTTATTGTTTAGTTTGGTCGTATCATATAGGAGGGTTTAGCTCGAAGATCTC_-_ATGGACCCATTTGGGCACGCCCGCAAGAAGGCGAGGTCCGAGACCTTTTTGAACGAAAATGGTGGTCTGTTCAATCCCCATGAGAGTAACATGTTCGGGGATGGCAACAGATTCAAGGCCGGTGGTATGAAATTCGCTTTACAGCCAGAAAAGGAGTCGTTACCAACAGGTTTAGGAAGCAAATCAAAGGCATGCACCAAGTTTTTCAGTCTTTCTGGATGCCCTTATGGAGAAGGCTGCCATTTCCAGCATTATGTTCCAGGTGGAGTGAATCCTGTTACTCAGATTGGAACTTTGGGGACTGCATTGGGTGCAGCTTCAAAGAAACCTACTGGGCTTTTGGCAGCAGAGCCAACATTAAATGCATCAAATTACAAGACACGCCTTTGTAGTAATTTTGGTACTGATACTGGATGTCGATTTGGGGACAAGTGCCATTTTGCCCATGGTGAAAAGGAGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGGAAGCTAGGTGCCTTGGTTCGTCAGCTGATCATGCACACGAGTGCTACACTGCCTGCAAAGCAGCCTTCATTTACTACAAACAATTTCAAAACCAAGCTCTGTGAAAACTATGCACAAGGCACATGTACATTTGGGGATCGTTGCCACTTTGCGCATGGTGCCAGTGAGTTGCGAGACAACTCTAAATAA___TTCTGATTTTCTCTATACTCTTCATTTATGGGTATATTCTAGAAAGGTACTGTATCACAAGTTTTGAACCAGGGATTGTAGATGGTGAGGATTAGTAGTTGTTGCATGTTTATTTTACTGCTTTGGGCTTGCTTGAACTTGGGCATGGCCTATTGTAGGGTGAAGTGCGCACATTATATTTCCCAATTTATTTGATGAAAACATTTCTGTGTAACTGAAATATTTTTGGAGTAGATGGGCTTTCCTTTTTTAAGTTTATTTATATCATAGACCTTTTGTTTGATTC

Fln Alignment:

sp_v1.1_unigene58842___MDPFGHARKKARSETFLNENGGLFNPHESNMFGDGNRFKAGGMKFALQPEKESLPTGLGSKSKACTKFFSLSGCPYGEGCHFQHYVPGGVNPVTQIGTLGTALGAASKKPTGLLAAEPTLNASNYKTRLCSNFGTDTGCRFGDKCHFAHGEKELGKVNAVAHNLKDDLATGPFGSRFPVXXXXXXXXXXXGYREATSPGMXXXXXXXXXXXAKISVDXXXXXXXXXXXGVNSKQICRSTGAKLAIRDHESDTNLKNIELEGSFDQIKEARCLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRKLGALVRQLIMHTSATLPA-KQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDN
B8LN83_______________MDPFGHARKKARSDAFLNENGGRFNPQESTMFGDGNRFKSGGLTFGSLPEKESLPTGLGSKSKACTKFFSTSGCPYGEGCHFQHHVQGGVNPVTQIPSLGSALGAASKKPVGVLPAEPTLNASNYKTRLCSNYNTGEGCRFGDKCHFAHGEKELAKVNAPAHNLKDDWATGPFGSRFPVGGLDGKPVGRPGYREATPPGMAAAATFGASATAKISVDAALAGPIIGKGGINSKHISRATGAKLAIRDHESDTNLKNIELEGSFDQIKEASAMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEASAMVRQLIMHTSAVLPAAKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1048	94		5		0.998578
1242	14			85	0.999981
1243		85	14		0.999981
1244		14		85	0.999981
1247	14			85	0.999981
1250			85	14	0.999981
1251		14	85		0.999981
1254		14		85	0.999981
1259	75			8	0.99999
1262		87	12		0.992554
1263		87		12	0.992554
1264	87		12		0.992554
1265	14	85			0.993533
1268			14	85	0.993533
1269		14		85	0.993533
1270		14		85	0.993533
1271	14			85	0.993533
1272	14	85			0.993533
1274			14	85	0.993533
1278	85	14			0.993533
1279	85		14		0.993533
1281	71	14			0.984337
1361	88		11		0.991528
1487	80			20	0.995493
1607	16	50			1.0
1608		83	16		0.994523
1609		83	16		0.994523
1612		16		83	0.994523

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain