SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58840

Length: 1227 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58840

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GRAM domain-containing protein / ABA-responsive protein-related	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GRAM	IPR004182	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPM4

Fln msg:

Fln protein: MMSKEDDQRQQLLQSDYTGKGGTAAGVTQPIVYPKLDAEGPTAPEAVNRDSGPSEKGKDSRKWGTKVMGPPAAPSAHPQNQEAATWTAPEEHPIPNSYIVQPSPMDSKSPIKSVHHCFNKWAKKAENLASEVWTNLKTGNNMPDVAWGKLTLGAKALTEGGFEALFRQTFSVSPDEKLQKAYACYLSTSTGPVAGTLYISTVKIAFCSDRPLSFTAPSGEASWSYYRVAIPLVNLTAVNPSTNKDNPAEKYIQIVTVDRHEFWFMGFINYENALKNLQEFIPHSARSGGYTS*

Protein Length: 294

Fln nts: CGTCGTGACCTTGGCTGTCACTCACAGGTATTCCGATCAGCATAGACCGATTTTCTGTGGATTGTTCTCGGATTTTGTATCCTCTGTGAATTCTGAAGCCCTGATTCGACAATTTTCTGTGGATTGTGCTCGGATTTTGTATCCTCTGTGAATTCTTAAGCCCTGATTCGCCAACAAGATTGCA_-_ATGATGAGTAAAGAAGACGATCAGAGGCAACAGCTTCTTCAATCCGATTACACAGGCAAAGGCGGAACAGCTGCCGGAGTAACGCAGCCGATCGTTTATCCGAAGCTGGACGCCGAGGGTCCGACTGCCCCGGAGGCGGTGAATCGAGATTCAGGTCCCTCAGAGAAGGGTAAGGATAGCAGAAAATGGGGCACCAAAGTCATGGGCCCTCCTGCGGCCCCCTCCGCCCATCCTCAAAACCAAGAGGCTGCCACGTGGACAGCTCCGGAGGAACACCCCATCCCCAACTCGTATATCGTGCAACCATCTCCAATGGACTCAAAATCCCCCATTAAGTCGGTGCATCACTGCTTCAACAAATGGGCCAAGAAAGCCGAGAATTTGGCCTCAGAGGTCTGGACCAACTTGAAAACTGGAAACAACATGCCGGATGTGGCATGGGGGAAGCTGACCTTGGGTGCCAAAGCCCTAACAGAAGGAGGCTTTGAAGCTCTGTTCCGACAGACCTTTTCCGTTTCTCCAGACGAGAAGTTACAGAAAGCGTATGCCTGTTATCTGTCGACATCCACGGGCCCCGTTGCCGGAACTCTGTACATCTCCACTGTGAAGATCGCATTCTGCAGCGATCGCCCCTTGTCGTTCACCGCTCCCTCCGGAGAGGCGTCCTGGAGTTACTACAGGGTTGCGATCCCGTTGGTGAATCTGACGGCTGTGAATCCTTCCACGAACAAAGATAATCCGGCTGAAAAGTATATTCAGATCGTGACGGTGGACCGTCACGAGTTCTGGTTCATGGGATTCATTAACTATGAGAACGCCCTGAAAAATTTGCAGGAATTCATCCCGCATTCAGCGCGCTCAGGAGGTTATACCTCGTGA___GCATCAACCAGCTTCTCGAACCGTCGACCGACCCCACAGCTGCCGGCTAGTCTCTTATGTATCTTTGTGCTGTTAAGAGTTTGGATATTTTAAACTTTAGGATGGCGACTTTATGTTTATCGTCTTTGTGTTTATTTAGTTTTGTCATTTGTATATGGTAACAG

Fln Alignment:

sp_v1.1_unigene58840___MSKEDDQRQQLLQSDYTGKGGTAAGVTQPIVYPKLDAEGPTAPEAVNRDSGPSEKGKDSRKWGTKVMGPPAAPSAHPQNQEAATWTAPEEHPIPNSYIVQPSPMDSKSPIKSVHHCFNKWAKKAENLASEVWTNLKTGNNMPDVAWGKLTLGAKALTEGGFEALFRQTFSVSPDEKLQKAYACYLSTSTGPVAGTLYISTVKIAFCSDRPLSFTAPSGEASWSYYRVAIPLVNLTAVNPSTNKDNPAEKYIQIVTVDRHEFWFMGFINYENALKNLQEFIPHSARS
B8LPM4_______________MSKADDQREQLLQSDYTDKSGRTAGETQPIVYPKLNGEGSTTPKALDRDSANSQK--DSRKWGTKVMGAPASPSAHPQNQEAATWTAPEEHPTPSSYIVQPSPVDSKSPINLVQHCFNKWTKKAENLASEVWTNLKTGNSMSDAAWGKLTLGAKALTEGGFEALFRQTFSVSPDEKLKKTYACYLSTSTGPVAGTLYMSTVKIAFCSDRPLSFTAPSGEASWSYYRLVIPLANLKAVDPSTNKDNPAEKYIQIVTVDGHDFWMMGFINYENAMSNLQESTRNSARS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
504	66		33		0.997452
619		83	16		0.994512
1168			18	81	0.999994
1174	87		12		0.992554
1187	16		16		0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain