SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58801

Length: 1066 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58801 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH	-	-	96%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	96%
Blast2go	ribulose bisphosphate small subunit	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	response to red light	GO:0010114	Biological Process	91%
Blast2go	response to cold	GO:0009409	Biological Process	91%
Blast2go	response to blue light	GO:0009637	Biological Process	91%
Blast2go	metabolic process	GO:0008152	Biological Process	91%
Blast2go	response to far red light	GO:0010218	Biological Process	91%
Blast2go	copper ion binding	GO:0005507	Molecular Function	91%
Blast2go	catalytic activity	GO:0003824	Molecular Function	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	0.0	91%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
585		5	10	85	0.999793
750	10		90		0.90298
811		80		20	0.995493
812		20	80		0.995493
813	80	20			0.995493
817		80		20	0.995493
843		6		93	1.0
931	3		95		0.918242
934	96		3		0.988113
935		3		96	0.988939
939	96	3			0.991825
940	5	3		90	0.999945
941	49	1	1		1.0
942	1	1	50		1.0
946		87	8	4	1.0
949	2	85			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain