SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58791

Length: 1480 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58791 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavanone 3-hydroxylase n=1 Tax=Ginkgo biloba RepID=Q5XPX2_GINBI	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	flavanone 3-hydroxylase	-	-	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ5

Fln msg:

Fln protein: MAPTTAVVNDRPDFLVTAETPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERDRVRDEVSKACSEWGIFQVVDHGVPQELVETMTQLSRAFFALPAEEKLKYDMRGGKRGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTNACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAVVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKLAKVAEKEQSEISK*

Protein Length: 365

Fln nts: CGTCGTGACCTTGGCTGTCACGCAACTACCCTTCACAATACATGGGGGTACCTCGGTTGAGGAAACCCTCTTTCCTGCTGCCGATCATCCAAGGAGGTCTTTGAGTGCACCGATTTTCCGAGTCTTGCTGCCCAATTTGTACTCAGCCAGGAAACA_-_ATGGCGCCCACAACAGCCGTGGTTAACGATCGCCCCGATTTCCTTGTAACGGCGGAGACGCCGAAGTCCCTGCAGTCCATTTTTATCCGAGACGAGGACGAGCGCCCCAAGGTGGCTTACAATCAATTCAGCAAAGACATTCCCGTCATTTCCCTCTCTGGTATCGCCGGGGAAGAGAGGGACCGCGTGAGAGACGAAGTGAGCAAGGCCTGTTCTGAATGGGGAATTTTCCAGGTGGTTGATCATGGTGTTCCCCAGGAGCTTGTGGAGACCATGACTCAGCTTTCCAGGGCTTTCTTCGCCCTCCCTGCAGAGGAGAAGCTCAAATACGACATGAGAGGTGGAAAGCGTGGAGGATTTGTGGTAAGCAGCCATCTGCAGGGCGAAGCCGTTCTGGACTGGAGAGAAATCTGCACTTACTTCTCTTATCCCCTTCACCAGCGTGATTACACAAGGTGGCCTGTCAAGCCCGATGGTTGGAGGGAGGTTGTGGAGAAATACAGCGAATCCCTTATGGGTTTGGCATGCAAGCTGTTGGGGATAATATCAGAGGCATTGGGATTGGAAACTGAAGCAGTGACCAATGCTTGTGTGGAGATGGACCAGAAAGTGGTGATAAACTTCTATCCCAAATGCCCACAACCAGACATGACATTGGGGCTGAAAAGGCACACCGATCCGGGCACCATCACTCTTCTCCTGCAAGACCAAGTTGGAGGCCTACAGGCTACCAAGGACGATGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCGTTGTTGTCAATTTGGGAGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCGGTGGTGAATTCGAACAGCAGCAGGCTGTCTATCGCGACGTTTCAGAATCCAGCGCAGGAGGCCATCGTGTACCCGTTGGATGGAGTTGTAAAGGAGGCGGAAGGCGAGAAGTGTTTCATGGAAGAGCCCATCACTTTTGCACAGATGTACACCAGAAAGATGAGCCGAGACATCGAGCTCGCCCGCCAGAAAAAGTTGGCCAAAGTCGCTGAGAAGGAACAATCAGAGATTTCCAAGTGA___TGTGAAGATCAGTTAAAGAAAAATGCAGCGATGTAGATTTTTATGTGTGTCTGCCTGGATGCTGTCTGTGTTCATGTGTTCTCGGAGATCTTAGTAACAATAAAAGCTTCCACCGACTTTGTCTACATTTTATATTTTGAAGTTGGATTGTACAGCACACTTCTACAAGTTAACTAAAGTAACCGTTTGTATTCTTTATCTATAGTTAAGTAAATAAAACATGTTGGTTCTC

Fln Alignment:

sp_v1.1_unigene58791___MAPTTAVVNDRPDFLVTAETPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERDRVRDEVSKACSEWGIFQVVDHGVPQELVETMTQLSRAFFALPAEEKLKYDMRGGKRGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTNACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAVVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKLAKVAEKEQS
A9NYQ5_______________MAPTAVVASDRPDFLVTAEVPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIEGAERGRVIDEVSKACSEWGIFQVVDHGVPKELVDSMTRLSRDFFALPAEEKLKYDMRGGKRGGFVVSSHLQGESVLDWREICTYFSYPLHQRDYSRWPVKPDGWREIVEKYSEALMGLACNMLAIVSEALGLESDAVTKACVEMDQKVVVNFYPKCPEPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKSADHQAVVNSNSSRLSIATFQNPAQEGIVYPLDGVVKEAEGEKCFMEEPITFTQMYTRKMSRDIELARQKKMAKVAEQEKS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
836		66		33	0.997452
853		75		25	0.996473
1257	86			1	1.0
1455	14	85			1.0
1456	7	92			0.999602
1459			15	84	1.0
1464	20	20		60	0.99255
1465	16			83	0.994512
1466		25	75		0.996473
1470	75		25		0.996473
1471	75			25	0.996473
1472			75	25	0.996473
1474	25		75		0.996473
1478		33	66		0.997452
1479	33			66	0.997452
1481		25		75	0.996475
1482		25	75		0.996475
1483	50	50			1.0
1484	25		50	25	0.995534
1486	33		66		0.997452
1488	33	66			0.997452
1490	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain