SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58775

Length: 1384 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58775

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylpropenal double-bond reductase n=1 Tax=Pinus taeda RepID=Q0PIN2_PINTA	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	nadp-dependent oxidoreductase p2	-	-	75%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	75%
Blast2go	GroES-like	IPR011032	-	75%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	75%
Blast2go	NAD(P)-binding domain	IPR016040	-	75%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKL3

Fln msg:

Fln protein: MERQIVPNRELILVEYANEGPVTDAHLKIRETQLDIRSVGKDGSPGDVAVQNLWISVDPYLRQLMKESVDGLYFPNFQLNQAIHSGLVGKVVASANPAFKVGDIVAGFYQVSEYAIVPGGNLRKIDTSIAKPSDYLGLLGMPALTAWAGFTIVGEPKPGDEVFVSAAAGSVGMLVGQLAKIKGCRVVGSAGSDQKVKLLKEFGFDDAFNYKSETDWDAALSRYFPRGIDIYFDNVGGRMLEAVLNHINMKARIPVCGMISQYNQEWKQRFGVRNLLNLVGKCAKMEGFLCGNYLHRMGEFFEEMTGYIKQGKMKYKEDVKVGLESFLEAFNSMFTGENIGKPVIYLGPPQ*

Protein Length: 352

Fln nts: ATGGGGAGGGGCGAATTCATTGAATGAGTGGTACTGTGTGTACAATTGCGGCCTGCTCCAACCATC_-_ATGGAAAGGCAGATAGTTCCCAACAGAGAGCTAATATTAGTTGAATATGCTAACGAAGGGCCTGTTACAGATGCACATTTGAAAATCAGAGAGACCCAATTGGATATTAGAAGCGTGGGCAAAGATGGATCACCTGGAGATGTCGCTGTGCAGAATTTGTGGATATCTGTAGATCCATATCTCCGGCAGCTTATGAAGGAATCTGTTGATGGTCTTTATTTCCCAAATTTTCAGTTAAATCAGGCAATCCACTCTGGCTTGGTAGGGAAGGTAGTGGCATCTGCCAATCCGGCCTTCAAAGTGGGCGATATCGTTGCCGGTTTCTATCAAGTCTCTGAGTACGCTATTGTTCCAGGAGGCAATCTCAGAAAAATTGACACCAGCATTGCTAAACCGTCTGATTATTTGGGACTTCTGGGGATGCCCGCCTTGACTGCATGGGCTGGTTTCACAATCGTCGGAGAACCTAAACCCGGGGATGAAGTTTTTGTCTCGGCAGCAGCAGGCTCAGTGGGAATGCTGGTTGGGCAGCTCGCCAAAATCAAAGGATGCCGCGTTGTTGGCAGCGCAGGTAGCGACCAGAAGGTGAAGCTGCTGAAAGAATTTGGTTTCGATGATGCATTCAATTACAAATCTGAGACAGACTGGGATGCAGCATTGAGCAGGTACTTCCCCAGAGGTATAGATATTTACTTTGACAATGTGGGTGGACGCATGTTGGAAGCTGTTCTGAATCACATCAACATGAAAGCTCGAATTCCGGTCTGTGGAATGATCTCTCAGTATAATCAGGAGTGGAAGCAACGTTTTGGAGTGAGAAACCTGCTGAACTTGGTGGGGAAATGTGCAAAGATGGAAGGCTTCCTGTGTGGGAACTACCTTCATCGCATGGGGGAGTTCTTTGAGGAGATGACAGGGTACATCAAGCAAGGGAAAATGAAATACAAGGAAGATGTTAAAGTGGGGTTGGAAAGCTTCTTGGAAGCTTTCAACTCCATGTTTACTGGAGAGAATATTGGTAAACCTGTCATTTACCTCGGGCCACCGCAGTGA___GTTCTGAATGAATGAGAGGCATGTTCCATTGAAGAGATCGGAAGAGGATCATATCAGCAGGATCcATGAAGTCACATGCAACCATTTGTGTCAAGCCACAGCAATAAATTCTGAATGAATATGAGGACATGTTTCTTAAAGTGATGGGAATGGTAATAGATTCTTACAAGGCACATGCAGTCACGTTGCTCTGCATGAGATTAGGCTCCTTTCACTGACAACTATTCATGGTTGTGGGTTTTTGATTTTAAAATTTATTTTATAT

Fln Alignment:

sp_v1.1_unigene58775___QIVPNRELILVEYANEGPVTDAHLKIRETQLDIRSVGKDGSPGDVAVQNLWISVDPYLRQLMKESVDGLYFPNFQLNQAIHSGLVGKVVASANPAFKVGDIVAGFYQVSEYAIVPGGNLRKIDTSIAKPSDYLGLLGMPALTAWAGFTIVGEPKPGDEVFVSAAAGSVGMLVGQLAKIKGCRVVGSAGSDQKVKLLK-EFGFDDAFNYKSETDWDAALSRYFPRGIDIYFDNVGGRMLEAVLNHINMKARIPVCGMISQYNQEWKQRFGVRNLLNLVGKCAKMEGFLCGNYLHRMGEFFEEMTGYIKQGKMKYKEDVKVGLESFLEAFNSMFTGENIGKPVIYLGPPQ
B8LKL3_______________QIISNRELILVAYANEGPVTDAHLKIRETQLDVGSVGKDGSPGDVAVQNLWISVDPYLRQLMKQSDDGLYMPSFQLNQVIRSASVGKVVASANPAFEVGDIVSGFYQVSEYAIVPGGGLRKIDTSVAKPSDYLGLLGMPALTAWSGFTIVGEPNPGDEVFVSAAAGSVGMLVGQLAKIKGCRVVGSAGSDQKVKLLKEEFGFDDAFNYKSETDWDAALARYFPRGIDIYFDNVGGRMLEAVLNNINMKARIPLCGMISQYNQEWKQRFGVRNLLNLVGKCVKMEGFMCGQYLHRMGEFLEEMTGYIKEGKLKYKEDVKEGLDSFLEAFNSMFSGDNLGKPVIYLGPPQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1060		81		18	1.0
1204	85	14			1.0
1239		93		6	0.999532
1311	9		90		0.990511
1320		90		10	0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain