SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58774

Length: 1776 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58774 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S0Z5_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pyruvate dehydrogenase e1 beta subunit	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Transketolase-like, pyrimidine-binding domain	IPR005475	-	89%
Blast2go	Transketolase, C-terminal	IPR005476	-	89%
Blast2go	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II	IPR009014	-	89%
Blast2go	Transketolase-like, C-terminal	IPR015941	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM3

Fln msg:

Fln protein: MASSAMAQVFGGFTALMPSFSSSNRLQLGFSKHPPEWKRSSIMIRLDASFSQYSNSRKRASKLVTSAVAVKDETATNPATSRTGHELLLFEALREGLDEEMERDPRVCIMGEDVGHYGGSYKVSKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDGPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ*

Protein Length: 409

Fln nts: TCTAGGGAGTTAACGAAGGCGTCACAAACAATGTCGTTGTTGCATGTGCACACTTAAAACAAATACAAATGGCCAGTGGGGAGAAACACAGTAGGAAATCCATAGATACAGATATTATGTACAAAGGGTTTGCTTTGCTGTAACTACAGCTGCAATTGCCCCGTTACAAGGCAGTTGCATAAGTTCCCACTTCGAAATTTGTGAGTTTCACTCTCAAAATTATCTCAA_-_ATGGCAAGCTCAGCCATGGCCCAAGTGTTTGGAGGGTTTACAGCCCTAATGCCTTCTTTTTCATCCTCTAACAGATTGCAGCTGGGCTTCTCCAAGCATCCACCAGAATGGAAGAGGAGTTCTATTATGATCCGATTGGATGCTTCGTTTTCTCAATATTCAAATTCAAGGAAACGAGCTTCGAAATTGGTTACCAGTGCTGTGGCGGTGAAGGATGAGACTGCTACAAATCCTGCAACATCAAGGACTGGGCACGAGCTGCTCTTGTTTGAGGCTCTTCGTGAAGGTTTGGATGAGGAGATGGAGAGGGATCCTCGAGTTTGTATCATGGGGGAGGATGTTGGCCATTATGGAGGTTCTTACAAAGTAAGCAAGGGCATGGCTGAAAAATATGGTGATTTGAGGGTGCTCGATACACCCATAGCTGAAAATTCTTTCACAGGGATGGGTGTTGGTGCTGCCATGACAGGGTTAAGGCCTGTTATTGAAGGAATGAATATGGGTTTTCTGCTATTGGCATTCAATCAGATATCAAATAATTGCGGCATGCTTCATTACACTTCAGGTGGGCAGTTTACTATTCCCGTCGTTATTCGAGGCCCTGGTGGGGTGGGGAGACAGTTAGGTGCAGAGCATTCACAACGGCTAGAATCTTATTTTCAGTCTGTTCCTGGATTGCAGATGGTTGCTTGCTCCACTCCATACAATGCAAAAGGGCTGATGAAAGCAGCTATTAGAAGTGAGAATCCCGTTATCTTGTTTGAGCATGTTCTTCTTTACAACTTGAAAGAGAAGATACCAGATGAAGAATATGTGTGTTGTCTTGAAGAAGCAGAAATGGTGCGCCCAGGTGCAGATATAACCATTCTGACTTATTCTCGTATGAGATACCATGTGATGCAGGCAGCAAAGACTTTAGTGAATAAGGGATATGATCCAGAGATAATTGACATCCGCTCTTTGAAGCCATTTGACTTGCACACAATTGGGAATTCAATAAAGAAGACACATAGAGTGCTGATTGTTGAAGAGTGCATGCGTACTGGTGGCATTGGAGCGAGTCTCAGGGCTGCAATTATTGAAAACTTTTGGGACTACTTAGATGGACCCATCATGTGCTTATCTTCACAGGATGTTCCAACACCATATGCAGGCACACTAGAGGACTGGACAGTGGTGCAACCTCCTCAAATTGTATCAGCAGTTGAGCAGCTTTGTCAATAG___TCTTCGTTTTTCTTTGACCAATGCAAAAGCCTTTGATAAAGTTGCAGGCCCATTGAAATTTTGGGTTGGTTATTGTTTTTCATAAAATTCATTTACCTTGATCTCAACTTTGTTCCAAGTTAGTAGTGTTTACTTTAATTTGGTTCTAGAGTTTAGTAGTGTTTATTATATTTATTATTAGATATGAAAATTCATAGTTTCTTTAAAACTGTTGGATCAGTCGCCTTGTTATCCGCCTAAATATTCCGATAATACAAGATTTGACATTGCTCACATTGCTGTTATTCTAGCTTTAATGTATTTTGTCTAAGATATTAGAGTTTG

Fln Alignment:

sp_v1.1_unigene58774___MASSAMAQVFGGFTALMPSFSSSNRLQLGFSKHPPEWKRSSIMIRLDASFSQYSNSRKRASKLVTSAVAVKDETATNPATSRTGHELLLFEALREGLDEEMERDPRVCIMGEDVGHYGGSYKVSKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDGPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ
A9NWM3_______________MASSAMAQGVGGITALMPSFSSSNRLQLGFSKHLPEWKRSSIAIRLDASFSQSSNSRKRASKLVTSAVVVKDETATSPATSKTGHELLLFEALREGLDEEMERDPRVCVVGEDVGHYGGSYKVTKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADVTILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDAPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQICQ

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
1101		12		87	0.992554
1592	68	10	21		1.0
1593	78			21	1.0
1594		68	31		1.0
1595	21	10		68	1.0
1600	78	21			1.0
1601	89		10		0.999919
1602	89		10		0.999919
1603			20	80	1.0
1604		10	20	70	1.0
1605	10			90	0.999898
1609	70	30			1.0
1611	22			77	1.0
1612		22	77		1.0
1618	14	78		7	0.999974
1620		7	14	78	0.999974
1622	7			78	0.999974
1624		76		23	1.0
1625	76		23		1.0
1628	23			76	1.0
1633	23			76	1.0
1634			23	76	1.0
1637	76	23			1.0
1641	14		85		0.999981
1642	14	14	71		0.999974
1656		10	90		0.90298
1657	10			90	0.90298
1660			10	90	0.90298
1667	88		11		0.991528
1669	88	11			0.991528
1717	14	14	14	57	0.979185
1718		14	14	71	0.984338
1719		14		85	0.993533
1721		71	14	14	0.984337
1722	28	14		42	1.0
1723		85		14	0.993533
1725		66	16	16	0.988814
1730	20			80	0.995493
1733		75		25	0.996473
1737			25	75	0.996473
1738	25			75	0.996473
1739		25		75	0.996473
1771		33	66		0.997452
1772	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain