SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58763

Length: 1703 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58763

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=47 Tax=Pinaceae RepID=CHSY_PINSY	-	-	94%
FL-Next	tr=Chalcone synthase; Pinus pinaster (Maritime pine).	-	-	98%
Blast2go	chalcone synthase	-	-	98%

Source	InterPros	Term	Type	Identity
Blast2go	Chalcone/stilbene synthase, N-terminal	IPR001099	-	98%
Blast2go	Polyketide synthase, type III	IPR011141	-	98%
Blast2go	Chalcone/stilbene synthase, C-terminal	IPR012328	-	98%
Blast2go	Thiolase-like, subgroup	IPR016038	-	98%
Blast2go	Thiolase-like	IPR016039	-	98%
Blast2go	Chalcone/stilbene synthase, active site	IPR018088	-	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8GUU4

Fln msg:

Fln protein: MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIIGADPVPEVEKPCFELIWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ*

Protein Length: 397

Fln nts: CGTCGTGACCTTGGATGGGGATGGGATTCCTTCATCTGGACTCGACTCGTCTTTTGCAGTTCATTTTGCGCTTGTGCTGTGTGGTAGCGGAGTGGTAAATAGTGCCAAGTGCCATAATAACAATT_-_ATGGCTGCAGGTATGATGAAGGATTTGGAGGCATTCAGGAAGGCTCAGAGGGCAGATGGCCCAGCCACCATCCTCGCTATTGGCACTGCCACTCCCCCCAATGCGGTTGATCAGAGTACTTACCCGGATTACTACTTCAAAATCACTAATAGCGAGCATATGACAGAGCTCAAGGAGAAATTCAGGAGAATGTGTGACAAATCCGCAATAAAAAAGAGATATATGTACTTGACAGAGGAGATCCTTCAGGAGAATCCCAGCGTATGTGCATACATGGCGCCATCGCTGGACGCACGGCAGGACATGGTTGTGGTGGAGGTGCCCAGGCTTGGAAAAGAAGCGGCTGCCAAGGCCATCAAGGAGTGGGGACAGCCCAAGTCCAAGATCACCCATGTCGTTTTCTGCACTACCAGTGGCGTCGACATGCCCGGAGCCGACTATCAGTTGACAAAGCTTCTTGGCCTCCGCCCGAGCGTCAAGAGAGTCATGATGTACCAACAGGGCTGCTTTGCTGGAGGCACCGTCCTCCGCGTGGCTAAAGATCTGGCTGAGAACAATAGGGGAGCTCGGGTTCTGGTCGTCTGCAGTGAAATAACAGCCGTTACCTTCCGTGGCCCGTCCGACACTCACCTAGACAGTATGGTCGGCCAAGCTCTCTTTGGCGACGGTGCGGCCGCCCTCATCATCGGAGCCGATCCCGTCCCTGAGGTGGAGAAGCCGTGTTTCGAGCTGATATGGACTGCTCAGACAATTCTTCCTGACAGCGACGGAGCCATTGACGGGCACCTGAGAGAGGTAGGCCTTACCTTTCACCTTCTCAAAGACGTTCCCGGGCTCATCTCCAAGAACATCGAAAAGAGTCTGGTTGAGGCCTTCCAGCAGTTCGGAATCTCGGACTGGAACCAGTTATTCTGGATCGCACATCCCGGAGGTCCTGCCATTCTGGATCAGGTGGAGGCCAAGCTAAATTTGGATCCCAAGAAACTAAGTGCCACGAGGCAAGTACTGAGCGACTATGGAAACATGTCGAGCGCCTGCGTGCACTTTATCTTGGACGAGATGAGGAAGTCCTCTAAAGAGAAAGGATGTTCCACCACCGGAGAGGGACTGGATGTGGGAGTTCTGTTCGGATTCGGGCCGGGCCTCACCGTGGAAACCGTCGTCCTCAAGAGCGTTCCCCTGCAATAA___TTCAGAAACGGGCTCGATATTAGTTATGTGTGACTGGGAGGTTAGCGGGATTAAAATTGCGTAAATATTTTCTGTAATTCCTAAGTATTCAGGTTTCCTTAGGGTACGATGCAATGCTTTAGGGTTTGATATAATGGCGCTGTCTGATAACTTAAATTACTGGCCTATATTTACATAATGGGCCTTTTTCTTTGAGCCTTTTTCCAATTTCCCATGGTTTTGAGAGGAATATTGTTCTTCCTGTTTGTGGCTAACTAAGCCTTTCAATGAACCATTTTGTAAGTTGGTGATCATTCAGCTTTGAATACAGTAATATTTATTACTATTACAGATCCACGGATCGAATCGAAAGAATAAAGGAATAATATTTTAAAATATTGATTTTAATAT

Fln Alignment:

sp_v1.1_unigene58763___MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQXXXXXXXXXXXXXXXPVPEVEKPCFELIWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLSATRQVLSDYGNMSSACVHFILDEMRKSSKEKGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ
Q8GUU4_______________MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELLWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1171		90		10	0.90298
1172			10	90	0.90298
1176	90		10		0.90298
1575		8		91	0.999807
1729	25			75	1.0
1731		12		87	0.992554
1733	50	25		25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain