SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58743

Length: 966 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58743 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L24, putative; K02896 large subunit ribosomal protein L24e	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	82%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L24e-related	IPR000988	-	82%
Blast2go	TRASH	IPR011017	-	82%
Blast2go	Ribosomal protein L24e domain	IPR023441	-	82%
Blast2go	Ribosomal protein L24e, conserved site	IPR023442	-	82%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
608	3	7		88	0.998862
635		89	10		1.0
637			11	88	1.0
639			11	88	1.0
640	11	88			1.0
641		11		88	1.0
643			11	88	1.0
645		11	88		1.0
646	11			88	1.0
648			11	88	1.0
649		88	11		1.0
652	12			88	1.0
655		12	87		1.0
677	87		12		0.999964
703		11		88	0.923564
704	11	88			0.923564
705	11			88	0.991528
706			14	85	0.993533
707			14	85	0.993533
714		14		85	0.993533
770		12	87		0.992554
771	87	12			0.992554
772	87	12			0.992554
784	85		14		0.993533
919	25		75		0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain