SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58739

Length: 1173 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58739

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Temperature-induced lipocalin n=1 Tax=Pinus taeda RepID=Q38JD0_PINTA	-	-	98%
FL-Next	tr=Temperature-induced lipocalin; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	temperature-induced lipocalin	-	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q38JD0

Fln msg:

Fln protein: MGKEDLQVVKGLDLQRYMGVWYEIASMPSLFQPKNGMNTRATYSLNKDSTVHVLNETFVDGKKSSIEGSAYKVDPKSEDAKFKVKFMVPPFLPIIPVYGNYWVLLLDEDYQWALIGEPSLKYLWVLCRQRQLDEAIYNRLLEHARQEGYDVGRLHKTTQNDDPETEAPKDKGFWWIKALLGK*

Protein Length: 184

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTTTTAGCGTCGTGACCTTGGCTGTCAGATGAGGTTGTTGTCGCCAAAGTCTTGGACCATCCTCAGAGAGCCGCGCTCCTCAGCAACTCGCCGAACTATTTCACGGCACCCGACGCTCTTAGGGAAATTATTATTACTACAACTAAATCTTCTTCGCGGGGCAGCGCCAACAGATTTAGAATTTTGTGACCAGGTCGCAGGTTCGAGCC_-_ATGGGAAAGGAGGATTTGCAGGTTGTGAAGGGACTAGACTTGCAGAGGTACATGGGGGTATGGTATGAAATCGCTTCGATGCCGTCCCTTTTCCAGCCAAAGAATGGCATGAACACCAGAGCTACGTATTCGCTGAATAAGGACAGCACTGTGCATGTGCTGAACGAGACGTTTGTGGACGGGAAGAAAAGCTCCATCGAGGGAAGTGCGTACAAAGTTGATCCCAAAAGCGAGGATGCCAAATTTAAAGTTAAATTTATGGTGCCTCCCTTTCTCCCCATTATTCCAGTCTATGGAAATTACTGGGTTCTGCTGCTGGATGAAGATTACCAGTGGGCTCTCATTGGAGAACCTTCTCTCAAATACCTCTGGGTCCTCTGCAGGCAACGACAGCTAGACGAAGCAATTTATAATCGTCTATTGGAACATGCTCGCCAAGAAGGGTACGACGTGGGTCGTCTTCATAAAACTACGCAAAATGACGATCCAGAGACTGAAGCTCCAAAGGATAAGGGGTTCTGGTGGATTAAAGCTCTGCTTGGAAAATAG___TGGGGTGATTCAATTCCTTATGGCACATCAGGAGTATGCTAGATTCTGTTTTTAGAGTATTTGGATAAGGTGTTTTCTAGTGGACTTGCTTTAGGAATGGCTAAAATTTTAGTGGAAGTTTGAGGGAGACCAGTGAAAACTTTTGGTGTTAATTTTGGTGTTAGTTGTTCTCTGGTTTTCATAGATTAGCAGCTTTATCTGTTCATGATAGTGTAGAATATGACATTTTGGTATTGATTATCAATGTGTACTGTACATATCTGTTCATCATAATGTACAATGTAACATTTTGGTATTGATTATCAGTGTATGTGCTGAATTCTATTGCTATAAGGTTTGCATTATGGTGTACAATATAACATATAAGTTTGCATTATGGTGTACAAAAA

Fln Alignment:

sp_v1.1_unigene58739___MGKEDLQVVKGLDLQRYMGVWYEIASMPSLFQPKNGMNTRATYSLNKDSTVHVLNETFVDGKKSSIEGSAYKVDPKSEDAKFKVKFMVPPFLPIIPVYGNYWVLLLDEDYQWALIGEPSLKYLWVLCRQRQLDEAIYNRLLEHARQEGYDVGRLHKTTQNDDPETEAPKDKGFWWIKALLGK
Q38JD0_______________MGKEDLQVVKGLDLQRYMGVWYEIASMPSFFQPKNGINTRATYSLNKDSTVHVLNETFVDGKKSSIEGSAYKVDPKSEDAKFKVKFMVPPFFPIIPVYGNYWVLLLDEDYQWALIGEPSLKYLWVLCRQRQLDEAIYNRLLEHARQEGYDVGRLHKTTQNDDPETEAPKDKGFWWIKALLGK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
835			97	2	0.936149
851	2		97		0.944212
1121		9		90	0.999872
1147	10	70	10	10	0.922578
1148		30		10	1.0
1149	12			87	0.992554
1150	75		12		0.975346
1151		14		85	0.993533
1162	20			80	0.995493
1163			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain