SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58731

Length: 1017 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58731

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitogen-activated protein kinase kinase Group C (EC:2.7.12.2)	-	-	4.0e-24	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	protein	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	66%
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	66%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	66%
Blast2go	ethylene biosynthetic process	GO:0009693	Biological Process	66%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	66%
Blast2go	camalexin biosynthetic process	GO:0010120	Biological Process	66%
Blast2go	response to salt stress	GO:0009651	Biological Process	66%
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	protein kinase activator activity	GO:0030295	Molecular Function	66%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD68

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 537 and 531, Unexpected STOP codon at 3' end. Distance to subject end: 64 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 252 - 337

Fln protein: RQRQTFCFSGKTSSRERKTRVGLKLPIPALEDAFSRPMQLPFPLQKPTIVNGARKLPCIPLEEVTLEYLQKISTLGCGSSGKVYMVKHVKTRKIYAxxxKHELAVRNKIMREMEILLRANSPHILQCYGxxxxxSPHIVQCYGIFDRRGEISFVLDYMEGGTLAQVLQAHKKFPEHYLAEIARQVLKGMHYLHHNKIVHRDIKPSNLLIIKRSQDCRFRCQNCVGSHFGPVQCNSFVGAYMSPERFDPDGY*

Protein Length: 253

Fln nts: TGGAGTTCGTATCAGGGTTTTTCGTGTTGTGGGGAGTTTATTTCCTGAAATTTGTATCGGTTCTTGTCTGAATTAGTGTTGTGGAGCGAAAGAGGGTTTTTGTCTGAAATGTTGTTGTGGAGAGAAATATGGTATATAGAGGCAAAGGCAAACTTTCTGTTTCAGTGGGAAGACGAGTTCAAGGGAGAGAAAAACGAGGGTGGGTTTGAAGCTACCAATCCCAGCTTtGGAAGACGCATTTTCTCgGCCAATGCAATTGCCAtTTCCACTGCAGAAGCCCACCAtCGTGAATGGTGCTCGCAAGTTACCCTGTATTCCTCTTGAAGAAGTTACACTAGAATATCTCCAGAAGATTTCAACTTTGGGGTGTGGAAGCAGTGGCAAGGTCTACATGGTTAAGCATGTCAAGACTAGGAAAATTTATGCTxxxxxxxxxAAGCACGAGCTTGCTGTTCGAAATAAAATAATGAGGGAAATGGAGATTCTCCTAAGGGCGAATTCTCCACACATCTTGCAGTGTTATGGCATxxxxxxxxxxxxTTCTCCCCACATCGTGCAGTGTTATGGCATATTCGATCGAAGAGGAGAGATCTCTTTTGTGTTGGACTACATGGAAGGTGGAACCCTTGCGCAGGTTCTTCAAGCCCACAAAAAATTCCCAGAACACTATTTGGCTGAGATTGCGAGGCAGGTGCTGAAGGGCATGCATTACCTACACCACAACAAAATTGTTCACCGTGATATAAAGCCCTCCAATTTACTGATCATTAAGAGAAGTCAAGATTGTCGATTTCGGTGTCAGAACTGTGTTGGTTCACACTTTGGCCCAGTGCAATGCAATTCCTTCGTGGGTGCTTATATGAGTCCTGAAAGGTTCGATCCTGATGGGTATTAATATACCATTTCTATTGTCTTCTGCCATGCAGTTCCTATGGTTTTTGAGTTTTTTTTGTTGTTGTATACATTCTGCAGCCTTAGTCAGGATGATACATCTAATTTTGGTGTTCTCATTGAATCTA

Fln Alignment:

sp_v1.1_unigene58731___SSRERKTRVGLKLPIPALEDAFSRPMQLPFPLQKPTIVNGARKLPCIPLEEVTLEYLQKISTLGCGSSGKVYMVKHVKTRKIYALRxxEEKHELAVRNKIMREMEILLxxxxxxxxxxxxxxxxRGEISFVLDYMEGGTLAQVLQAHKKFPEHYLAEIARQVLKGMHYLHHNKIVHRDIKPSNLLIIKRSQ--DCRFRCQNCVGSHFGPVQCNSFVG--AYMSPERFDPDGY
D5AD68_______________SSRERKAKVGLKLPIPVREDAFSKPMPLPLPLPKPPNMNGACKLPCVPLEEVTLEDLQKISTLGCGSSGKVYKVKHVKTGKIYALKxxQEKHELAVRKQIMREMEILRxxxxxxxxxxxxxxxxGGEISFVLEYMDGGTLAQVLQAHKKIPEHYLAEVARQVLKGLLYLHQNKIVHRDIKPSNLLINKRREVKIADFGVSTVLAHTL--AQCNSFVGTCAYMSPERFDPDGY

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
490			14	85	0.993533
491		85	14		0.993533
492			14	85	0.993533
526	28			71	1.0
548	14	85			0.993533
635		87	12		0.992554
664		85	14		0.999981
665		85	14		0.999981
667	86			13	0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain