SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58724

Length: 998 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58724 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S24 n=3 Tax=Embryophyta RepID=A9NKN3_PICSI	-	-	87%
FL-Next	sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	chloroplast	GO:0009507	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S24e	IPR001976	-	95%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	95%
Blast2go	Ribosomal protein L23/L15e core domain	IPR012678	-	95%
Blast2go	Ribosomal S24e conserved site	IPR018098	-	95%

Full-Lengther Next Prediction

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
581		2	0	96	0.997934
587	97		2		0.924243
588		97	2		0.924243
591	97	2			0.949185
595		96	3		0.999934
604	1			91	1.0
605		6	1	92	1.0
606	6		1	92	1.0
607			6	93	1.0
611		93	6		1.0
612		92	7		1.0
618	92	6			1.0
619		1	7	90	1.0
622	6		93		1.0
623		2	97		0.967822
629	95	3	1		0.924724
630	96		3		0.988113
631		93	6		1.0
632		94	1	3	0.936582
637	92		7		1.0
638	96			3	0.993591
640	96		3		0.99245
641	96	3			0.993591
643		3		96	0.99411
644	96		3		0.99411
649		91	6		0.999995
654		4	95		0.999983
656		4	4	91	0.998468
657	4	95			0.999984
658		95	4		0.999986
660		4		91	0.99885
661	8			91	1.0
663		90	9		1.0
664			6	91	1.0
668			6	93	1.0
739	94	1			1.0
743	97		2		0.944212
752		97	2		0.953846
753	2	97			0.953846
755	3			96	0.999943
770	2			97	0.924243
771	97	2			0.924243
790		2		97	0.941605
792		2		97	0.944212
794	97			2	0.944212
826		2		97	0.956062
888	3	96			0.986325
892		3		96	0.987242
913	42	5			1.0
914	2	8	88		0.999999
915		5		42	1.0
916	47	5	41		1.0
918		94		5	0.998744
926		53		3	1.0
927	45			54	1.0
930		54		45	1.0
932	48			51	1.0
933		44	3	51	1.0
934		10	89		1.0
935	48	10	37		1.0
936		60	10		1.0
937		10	50	39	1.0
938	23			76	1.0
944	90		10		0.90298
946	27	18			1.0
947	72	27			1.0
948	72	27			1.0
949		10	20		0.999998
956	11	22		66	0.999999
957		37	62		1.0
959	25	25			1.0
960	12	87			0.992554
962		12	62	25	1.0
965	80			20	0.995493
967	16		83		0.994523
968	16		83		0.994523
971	83			16	0.994523
974	83			16	0.994523
976			83	16	0.994523

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain