SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58713

Length: 2077 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene58713
CGTCGTGACCTTGGCTGTCACTCGAGAGTCCTGTATTCCCCGAGATTCATTCGGTCCGTTGGATTTTTAGATTCAGCAGCCAGTACTGATCGAGCCCTCTGGCAATCAGCCAAAGCAGCCTGAGAAAGAGAAGATGAGGGAAATTCTGCATATTCAAGCTGGGCAATGCGGGAACCAGATCGGAGGGAAGTTCTGGGAAGTGGTGTGCGACGAGCACGGGATCGATCCCACTGGGACTTACAGAGGGAACTCCGATCTGCAGCTGGAGAGAGTGAATGTCTATTATAATGAAGCCAGCGGAGGGCGCTACGTTCCTCGAGCGGTTTTAATGGATCTGGAGCCAGGAACTATGGACAGCCTCAGGACGGGGCCTTATGGCCAGATCTTCAGGCCCGATAACTTCGTTTTCGGTCAGAATGGCGCTGGGAACAACTGGGCCAAGGGGCATTACACCGAGGGGGCCGAACTCATCGATTCCGTTCTTGATGTCGTCCGCAAAGAGGCCGAGAATTGCGATTGCCTCCAAGGTTTTCAGGTCTGTCATTCACTGGGAGGCGGAACTGGATCAGGCATGGGCACGCTGATTATATCTAAGATCAGAGAAGAGTATCCGGATCGGATGATGCTTACATTCTCAGTTTTCCCATCCCCTAAAGTGTCTGACACGGTTGTAGAGCCTTATAATGCCACACTTTCGGTTCATCAACTCGTGGAAAATGCAGATGAATGTATGGTGCTGGATAATGAAGCACTATATGACATATGCTTCAGAACACTCAAACTTGCCACTCCAACATTCGGAGATCTGAATCACCTGATCTCGGCCACTATGAGTGGAGTTACGTGCTGCCTTAGATTTCCTGGCCAGTTGAACTCTGATCTCCGGAAACTGGCTGTCAACCTTATCCCATTCCCTCGTCTGCATTTTTTCATGGTGGGTTTTGCCCCTCTTACCTCCTGGGGTTCTCAGCAATATCGTGCCCTTACAATCCCAGAACTAACCCAGCAAATGTGGGATGCAAAGAACATGATGTGTGCAGCTGATCCTAGGCATGGCAGGTACTTAACTGCATCTGCAATGTTCAGAGGGAAGATGAGCACCAAAGAAGTAGATGAACAGATGATGAATGTACAGAACAGAAACTCCTCCTATTTTGTTGAGTGGATTCCAAACAATGTAAAATCCAGTGTCTGTGACATTCCTCCCACAGGATTGACAATGTCATCTACTTTTATAGGCAATTCTACCTCCATTCAAGAGATGTTCAGGAGAGTCAGTGAACAATTCACTGTCATGTTCAAAAGAAAAGCTTTTCTTCATTGGTACACAGGGAGGGCATGGATGAAATGGAGTTCACCGAGGCTGAGAGCAACATGAATGATTTGGTTTCTGAGTATCAGCAATACCAGGATGCTAATGTTGATGAAGAAGATGATTATGAAGAAGAACCATTAGAGGATGGAGAATAATCAACTATGCTTCCATCTACTTCCAAGTTCAATAATAACATATTATATATATAAAAAATTGCTTTCATATGATGGGGGTAATTGGATGTGAGATTGGCTATCAAGGAATTGGTGACATGTATATTCACTGGGAGTGACGACCTCCTCTAAATGAATAGGTGGTTCTCTTGCTATTTTCATCAAGCATTGCTACTTTTAATAACAAGCAGCACTTTGTACTCTAAAGTCCTTTATCATTGCAAATTTGGGAGGTGGTGGACTTTATCATCTTTGGCAAAACTACATTTTCTGTGATTGAATTTCAGGAAATTCCCATCTCTACTAAAAAGGCAGCTGTACCTACAATAAATGTTGTGAACGTGCATTCGCACTCTCGGGTGGACATTTTCACAATTGGAAATTTTCGAGGGGCTGTGGGCAGTCATATAGCTTTGGCTAGCAGTTTGTACTGATCCGCATAGGTGTGGATTATAGACATGTAAGCTCTTCAATGACTTTAGTAGTCATTTTTTATTTATCTGTTGAACATTGTCATGACAATTTGATGTCAAGCCATCCACACTTCAAAGATCTCAGGCAATCAAAATCTTCTCGTCGTTGGATGTTC

Ace file of the UniGene sp_v1.1_unigene58713

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-3 chain n=4 Tax=rosids RepID=TBB3_GOSHI	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	beta chain	-	-	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPY0

Fln msg: Overlapping hits, possible frame ERROR between 1333 and 1300,

Fln protein: MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGTYRGNSDLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLIISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSWGSQQYRALTIPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNRNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFIGNSTSIQEMFRRVSEQFTVMxxxxxxxxxxxxxGMDEMEFTEAESNMNDLVSEYQQYQDANVDEEDDYEEEPLEDGE*

Protein Length: 447

Fln nts: CGTCGTGACCTTGGCTGTCACTCGAGAGTCCTGTATTCCCCGAGATTCATTCGGTCCGTTGGATTTTTAGATTCAGCAGCCAGTACTGATCGAGCCCTCTGGCAATCAGCCAAAGCAGCCTGAGAAAGAGAAG_-_ATGAGGGAAATTCTGCATATTCAAGCTGGGCAATGCGGGAACCAGATCGGAGGGAAGTTCTGGGAAGTGGTGTGCGACGAGCACGGGATCGATCCCACTGGGACTTACAGAGGGAACTCCGATCTGCAGCTGGAGAGAGTGAATGTCTATTATAATGAAGCCAGCGGAGGGCGCTACGTTCCTCGAGCGGTTTTAATGGATCTGGAGCCAGGAACTATGGACAGCCTCAGGACGGGGCCTTATGGCCAGATCTTCAGGCCCGATAACTTCGTTTTCGGTCAGAATGGCGCTGGGAACAACTGGGCCAAGGGGCATTACACCGAGGGGGCCGAACTCATCGATTCCGTTCTTGATGTCGTCCGCAAAGAGGCCGAGAATTGCGATTGCCTCCAAGGTTTTCAGGTCTGTCATTCACTGGGAGGCGGAACTGGATCAGGCATGGGCACGCTGATTATATCTAAGATCAGAGAAGAGTATCCGGATCGGATGATGCTTACATTCTCAGTTTTCCCATCCCCTAAAGTGTCTGACACGGTTGTAGAGCCTTATAATGCCACACTTTCGGTTCATCAACTCGTGGAAAATGCAGATGAATGTATGGTGCTGGATAATGAAGCACTATATGACATATGCTTCAGAACACTCAAACTTGCCACTCCAACATTCGGAGATCTGAATCACCTGATCTCGGCCACTATGAGTGGAGTTACGTGCTGCCTTAGATTTCCTGGCCAGTTGAACTCTGATCTCCGGAAACTGGCTGTCAACCTTATCCCATTCCCTCGTCTGCATTTTTTCATGGTGGGTTTTGCCCCTCTTACCTCCTGGGGTTCTCAGCAATATCGTGCCCTTACAATCCCAGAACTAACCCAGCAAATGTGGGATGCAAAGAACATGATGTGTGCAGCTGATCCTAGGCATGGCAGGTACTTAACTGCATCTGCAATGTTCAGAGGGAAGATGAGCACCAAAGAAGTAGATGAACAGATGATGAATGTACAGAACAGAAACTCCTCCTATTTTGTTGAGTGGATTCCAAACAATGTAAAATCCAGTGTCTGTGACATTCCTCCCACAGGATTGACAATGTCATCTACTTTTATAGGCAATTCTACCTCCATTCAAGAGATGTTCAGGAGAGTCAGTGAACAATTCACTGTCATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCATGGATGAAATGGAGTTCACCGAGGCTGAGAGCAACATGAATGATTTGGTTTCTGAGTATCAGCAATACCAGGATGCTAATGTTGATGAAGAAGATGATTATGAAGAAGAACCATTAGAGGATGGAGAATAA___TCAACTATGCTTCCATCTACTTCCAAGTTCAATAATAACATATTATATATATAAAAAATTGCTTTCATATGATGGGGGTAATTGGATGTGAGATTGGCTATCAAGGAATTGGTGACATGTATATTCACTGGGAGTGACGACCTCCTCTAAATGAATAGGTGGTTCTCTTGCTATTTTCATCAAGCATTGCTACTTTTAATAACAAGCAGCACTTTGTACTCTAAAGTCCTTTATCATTGCAAATTTGGGAGGTGGTGGACTTTATCATCTTTGGCAAAACTACATTTTCTGTGATTGAATTTCAGGAAATTCCCATCTCTACTAAAAAGGCAGCTGTACCTACAATAAATGTTGTGAACGTGCATTCGCACTCTCGGGTGGACATTTTCACAATTGGAAATTTTCGAGGGGCTGTGGGCAGTCATATAGCTTTGGCTAGCAGTTTGTACTGATCCGCATAGGTGTGGATTATAGACATGTAAGCTCTTCAATGACTTTAGTAGTCATTTTTTATTTATCTGTTGAACATTGTCATGACAATTTGATGTCAAGCCATCCACACTTCAAAGATCTCAGGCAATCAAAATCTTCTCGTCGTTGGATGTTC

Fln Alignment:

sp_v1.1_unigene58713___MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGTYRGNSDLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXXSKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSWGSQQYRALTIPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNRNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFIGNSTSIQEMFRRVSEQFTVMFxxxxxxxxxxxEGMDEMEFTEAESNMNDLVSEYQQYQDANV
C0PPY0_______________MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGTYRGNSDLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLIISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTIPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNRNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFIGNSTSIQEMFRRVSEQFTVMFxxxxxxxxxxxEGMDEMEFTEAESNMNDLVSEYQQYQDANV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1570		20		80	0.995493
1726	96	3			0.98536
1777	12		87		1.0
1808	83		10		1.0
1978	95		4		0.994598
2032		18		81	0.999994
2043	88		11		0.923564
2066		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain