SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58708

Length: 969 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58708 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Translation initiation factor n=4 Tax=eudicotyledons RepID=B5M1Y2_RHEAU	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	97%

Source	InterPros	Term	Type	Identity
Blast2go	Translation initiation factor 1A (eIF-1A)	IPR001253	-	97%
Blast2go	RNA-binding domain, S1, IF1 type	IPR006196	-	97%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	97%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	97%
Blast2go	Translation initiation factor 1A (eIF-1A), conserved site	IPR018104	-	97%

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
640	1		92		0.999979
643	1		5	92	0.999982
685	1	92			0.999986
686			3	94	0.960243
688	1	94			0.960243
690		94		1	0.960243
691	96		3		0.993037
694	5		92		0.999991
699	6			94	0.999998
700			5	94	0.999998
702		94		5	0.999998
705	94	5			0.999998
708	94		6		0.999998
782		4		95	0.997749
872	92	7			0.999718
877	80			19	1.0
882	80		19		1.0
883	85	14			1.0
884	80	19			1.0
885	14		85		1.0
886	15			80	1.0
887			15	85	1.0
888			15	85	1.0
891	13	86			1.0
894	13			86	1.0
908		84	15		1.0
950	90	10			0.903027
951		10	90		0.90304
952	62	12			1.0
954	85			14	0.993533
961		57	14		1.0
962		71		28	1.0
963		71	14	14	0.984377
964	14	85			0.993541
965	85		14		0.993541
966		14		85	0.993541
967	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain