SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58705

Length: 1154 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58705

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase, putative (EC:1.2.1.36); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	aldehyde dehydrogenase	-	-	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	0.0	80%

Source	KEGGs	Term	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010	80%
AutoFact	Pentose and glucuronate interconversions	00040	80%
AutoFact	Ascorbate and aldarate metabolism	00053	80%
AutoFact	Fatty acid metabolism	00071	80%
AutoFact	Valine, leucine and isoleucine degradation	00280	80%
AutoFact	Lysine degradation	00310	80%
AutoFact	Arginine and proline metabolism	00330	80%
AutoFact	Histidine metabolism	00340	80%
AutoFact	Tryptophan metabolism	00380	80%
AutoFact	beta-Alanine metabolism	00410	80%
AutoFact	Glycerolipid metabolism	00561	80%
AutoFact	Pyruvate metabolism	00620	80%
AutoFact	Chloroalkane and chloroalkene degradation	00625	80%
AutoFact	Propanoate metabolism	00640	80%
AutoFact	Limonene and pinene degradation	00903	80%
AutoFact	Metabolic pathways	01100	80%
AutoFact	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg: your sequence is shorter than subject: 235 - 544

Fln protein: RRDLGCHSIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKVMGYIKSGRESGAKLVTGGDQIGTKGFYIMPTIFSEVKDDMTIATDEIFGPVQSIIKFKTLDEVIKRANATRYGLAAGVFTKNLETANSLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLNNYLQVKAVVSPLKNPAWL*

Protein Length: 236

Fln nts: CGTCGTGACCTTGGCTGTCACTCTATTGTATGCGAAGATGCTGATGTTGATCAAGCCGTGGAGCTCGCTCACTTTGCATTATTTTTCAATCAGGGTCAATGCTGCTGTGCTGGGTCACGAACCTTTGTACATGAGAGTATCCATGATGAGTTTGTAGAAAAAGCAAAAGCGCGGTGTTTAAGTCGGGTTGTCGGTGATCCTTTTAGAAAAGGTGTTGAGCAGGGTCCTCAGATTGACCAGGAACAGTTTAACAAGGTTATGGGTTATATCAAGTCTGGGAGGGAGAGTGGTGCAAAACTTGTAACAGGGGGAGACCAAATTGGTACCAAGGGCTTCTATATTATGCCTACCATCTTCTCAGAAGTCAAGGATGACATGACCATAGCTACTGACGAAATATTTGGTCCAGTACAGTCAATTATAAAATTCAAAACTTTAGACGAAGTAATAAAGCGGGCGAATGCTACTCGTTATGGCTTGGCAGCAGGAGTGTTTACAAAGAATCTAGAGACCGCGAACTCTCTTACTCGGGCATTACGTGTCGGAACAGTTTGGGTTAACTGCTTTGACATTTTTGATGCTGGTATACCTTTTGGTGGCTATAAAATGAGTGGCACTGGAAGAGAGAAGGGTATCTACAGTCTCAATAACTACTTACAGGTTAAAGCTGTTGTCTCGCCTTTGAAGAATCCAGCCTGGTTGTAG___GCTGTTAGTTCCTACAAATGGTTCAATTGTGTGGGGAACATATTCAGTTCCTGATGGTCTTGTCAAGTCAGTCTAATTTGAATTTAGCTTTCTCTGTCAATAATTAATGTATATGACCTTCAGATAGTTGTGATGCTCTTGTTTTCCTGTGAACCTGCACAGTTGTGTCTCTGTAAGATTCTGTAGTTTCAGAATTTGGAACTCAATTATCATGGCCATTTCAAATGCGAAATGAAGGGTGTCATTGTTTCTGCCATGTTTTATGCTTCTTGTTTTTCTGTGAAGGTGCATAGTCATGTTTCTGCAAGACTCTGTAGATTCAGAATTTGGAACTCAATTATCATGTTCATATCAAATGGTTGTGATGGTTTTGCCATCTTTCATGGTTCTGCATTTACAGTGAATCATTATTTAGTCTGTAAAGCACATCAGTCCAATATTGGTTTATG

Fln Alignment:

sp_v1.1_unigene58705___IVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKVMGYIKSGRESGAKLVTGGDQIGTKGFYIMPTIFSEVKDDMTIATDEIFGPVQSIIKFKTLDEVIKRANATRYGLAAGVFTKNLETANSLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLNNYLQVKAVVSPLKNPAWL
A9NUF6_______________IVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQDDMAIATDEIFGPVQSIIKFKTLDEVIKRANASRYGLAAGVFTQNIETANTLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLQNYLQVKAVVTPLKNPAWL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
774		6		93	0.999532
984		44		44	1.0
989			12	87	0.992555
990			87	12	0.992554
1038			20	80	0.999996
1045			30	70	1.0
1062	77		22		0.999999
1080		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain