SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58673

Length: 1286 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58673

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin-specific chaperone B, putative n=1 Tax=Ricinus communis RepID=B9ST41_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	tubulin folding cofactor b	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	80%
Blast2go	cell division	GO:0051301	Biological Process	80%
Blast2go	phragmoplast	GO:0009524	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEA6

Fln msg:

Fln protein: MASVLQNVPDDTVLLHVTHSNLKHHFSELRFSLHSTVGATKERLWKNCGTAVDSMALQLFDDTDKKVCDMNEDSQPLGFYSPLDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYHISEESYGKLDGTFRKFKERLISQDPSIAQPKISEDYMQDLAANIKVGDRCEVDPGGRRGVVMFVGRAETLPPGFWVGVQYDEPVGKNDGMVKGKRYFSCPPLQGAMLRPDKVKVGDYPERDPFEEEEI*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGACCTTTCAACTTTAATTTGTTGTTCTCTGCTTCCTTTCTGTTCAGAAAGGTTTTCATTCGCCAAACGGTAATGAATTTTTAAAGCAGTGCTTTGTGAATCGTAGGGAAGGTACTTTCAAGTCCTAAACAGGCATTTAATACCTATGTATATTGATTCTTAGACGCCTCGAAGTTCTGGCACCTTCAGATCGATATTGATTTCTGGTGATTTTATAGTGACACATCGCAGAGCAACGG_-_ATGGCCTCTGTCCTGCAGAATGTGCCCGATGACACAGTCCTTCTTCATGTCACTCATTCTAATCTCAAGCATCATTTTAGCGAGCTAAGGTTTTCTCTTCATTCTACAGTTGGGGCTACAAAAGAGAGGCTTTGGAAGAATTGTGGGACAGCAGTTGACTCCATGGCTCTTCAACTCTTTGATGACACTGACAAGAAGGTCTGTGACATGAATGAGGACTCACAGCCTCTTGGGTTTTATTCTCCACTTGATGGGTATCGCATACATATTGTAGATATGGACCCATCATCAATGACTGCTGGAGGCTGGTTAGAAGACACTTCATTGGTGGAAAAGTATCACATTTCAGAAGAGTCTTATGGTAAACTTGATGGGACGTTTAGAAAATTCAAGGAAAGACTGATTTCTCAAGACCCTTCTATTGCTCAACCAAAGATTTCAGAAGACTACATGCAAGATCTAGCTGCAAATATAAAAGTAGGTGATAGATGTGAAGTTGATCCTGGAGGCAGGAGGGGCGTGGTTATGTTTGTGGGCAGGGCAGAAACTCTTCCTCCTGGATTTTGGGTTGGAGTGCAATATGATGAACCTGTTGGCAAGAATGATGGAATGGTGAAAGGAAAACGCTATTTCAGTTGTCCACCGTTGCAAGGCGCTATGCTTCGACCAGATAAAGTGAAGGTGGGAGATTATCCTGAGCGGGACCCATTTGAAGAAGAGGAAATATAA___GTACTTCAATGCTTTTAAACTGTCTTGGGAGTTCATGTATACGTCCTTGTTAGTAAGGATTCATTATTCATGAAAAATATTGGATGCATGAGATATTTATAGGATGTATATGTTTTACCATCCTTTCTACTTATATTTTTCATGTAAATCTACCATCACGTCGTATGTACATCTTGGGTGGTTCGATAAAGAGGAGGTTGTTGTTGTAATTCAATACAAATTAAATAATCAAGAGAATGGATTTTGGATAGTCTAAAATTTCATTTTGTTAATCCGATGTTGGGAGGCATTGTTT

Fln Alignment:

sp_v1.1_unigene58673___MASVLQNVPDDTVLLHVTHSNLKHHFSELRFSLHSTVGATKERLWKNCGTAVDSMALQLFDDTDKKVCDMNEDSQPLGFYSPLDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYHISEESYGKLDGTFRKFKERLISQDPSIAQPKISEDYMQDLAANIKVGDRCEVDPXXXXXXXXXXXXAETLPPGFWVGVQYDEPVGKNDGMVKGKRYFSCPPLQGAMLRPDKVKVGDYPERDPFEEEEI
D5AEA6_______________MASVLQNVCDDTVLLHVTHSNLKQHFSEIRFSLHSTVGATKERLWKNCGTSVDSMVLQLFDDNDKKVCDMNEDSQPLGLYSPRDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYRISEESYGKLDGTFRKFKERLVSPDPSISQPKISEDYMQDLAANIKVGDRCEVDPGGKRGAVMFVGRAETLPPGFWVGVQYDEPVGKHDGMVKGKRYFSCPPLQGVMLRPDKVKVGDYPERDPFEEEEI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
793		55		44	1.0
835		6	81		0.999943
836	6	12	81		0.999943

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain