SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58670

Length: 1255 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58670 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[J] COG0080 Ribosomal protein L11	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	98%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L11	IPR000911	-	98%
Blast2go	Ribosomal protein L11, C-terminal	IPR020783	-	98%
Blast2go	Ribosomal protein L11, N-terminal	IPR020784	-	98%
Blast2go	Ribosomal protein L11, conserved site	IPR020785	-	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZX9

Fln msg:

Fln protein: MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVIEIAKVMRPRSMAKELAGSVKEILGTCLSVGCTVDGKDPKDVQAEIDEGEVEIPEE*

Protein Length: 168

Fln nts: CAATCGAAGGGGCCAGATTCAACAACCAATGCGCACCGTCGATCGTAGGGTTTTTAGAACGTTAAATTTAGACATGGGGAGGGTTTTCATTCCTTTCGTTTGTAGTTTTTATAACGTCGTGACCTTGGCTAGTCATGGAAGATTTGCAGAGGGCGGCAGCAGCAAGAATATCGAAGACTCTTTAGTGTTTTGTGAAAAATTTGACAGTC_-_ATGCCTCCCAAGCTTGATCCTTCCCAAGTGGTCGAGGTGTATGTGAGGGTCACAGGGGGCGAAGTGGGAGCTGCTTCGTCTCTGGCCCCCAAGATCGGTCCTCTGGGTCTATCGCCCAAGAAGATCGGAGAAGACATTGCAAAGGAAACTGCGAAGGACTGGAAGGGTTTGAGGGTCACGGTAAAGCTCACCGTTCAGAACAGGCAGGCCAAGGTCGCTGTGGTGCCGAGTGCTGCTGCCCTGGTCATAAAAGCGCTGAAGGAGCCCGAGAGAGATAGGAAGAAAACGAAGAACATCAAGCACAATGGAAATATCGCCCTAGATGATGTCATTGAGATCGCTAAGGTTATGAGGCCGAGGTCCATGGCGAAGGAATTGGCCGGATCGGTGAAGGAGATTCTGGGTACATGCCTCTCCGTCGGCTGCACGGTGGATGGAAAGGATCCCAAGGATGTCCAGGCCGAGATCGACGAAGGGGAGGTCGAGATCCCCGAAGAATGA___AGGAAGAATTCACATTTGGTAATTGAAATGAGAGCCTTTCGTTATTTTTATTGTTGGGTATTTGTTCGTTTGTTTAGGGTTTTAAGGTTTAAGGGAGTTGAAAATTGGAAGAAGGTGGCCTGTGAATTTGATTTCACGACCTTGGCGGGTTTCGAGTTAGTAGGGGCCTATGAATTTCATTTCAGGTCCTGGGGATTTTGAGGCATTTTCCACTTCTTTGAAGACTTTGGGTAGTTAGATAATATATTTACGCGTTGATCCGCTGAATGGATGGAAGCATTTGTTGGAAGAGAAATGATTGGTGAAATTATAGTTAGTGTTTTTTTGTTGCACTGTTGCATTATATGGATTAATGGCGTGTTGGTATCGTGTGGGTAGGTTATGATAATTTATCGGAAGTAAGGTTTGATTGATGATTAAAGATGACTATGAAATGAAGTCTTTTGATATGGCTTTGGAAGCTAAAATGCTCTGTTTTTCACATTGTAGTTGACTTGATGTATTTTTTGTTACATAGAAAAGAGTTGCAAATGTGTAGAACTCCC

Fln Alignment:

sp_v1.1_unigene58670___MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVIEIAKVMRPRSMAKELAGSVKEILGTCLSVGCTVDGKDPKDVQ
A9NZX9_______________MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVIEIARVMKPRSMAKELAGTVKEILGTCLSVGCTVDGKDPKDVQ

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1140	33	33			1.0
1141	33	33		33	1.0
1142	27	38	33		1.0
1143	33	66			1.0
1145	38	27	33		1.0
1146		27		72	1.0
1147		45	54		1.0
1148	54	45			1.0
1152			50	50	1.0
1155	50	50			1.0
1156	54	45			1.0
1158	45		54		1.0
1160		54		45	1.0
1161	54	45			1.0
1165	45	54			1.0
1166			54	45	1.0
1186	60		40		1.0
1189		20		20	0.992567
1190		20	80		0.995497
1191	80	20			0.995497
1192	75		25		0.996473
1196	75	25			0.99649
1198	75		25		0.99649
1201	33	66			0.997452
1202	33			66	0.997452
1204	25	50	25		0.995595
1205	25	50	25		0.995595
1206		75		25	0.996486
1208	75	25			0.99649
1209		25		75	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain