SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58668

Length: 1601 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58668 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8SWR5_SELML	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	gtp binding protein	-	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKR1

Fln msg:

Fln protein: MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNLDSFVRAKNWVLELQKQGNPNLVMALAGNKADMAAKRKVEPEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAESAKTYSCCT*

Protein Length: 202

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAATAATGGACAACCTAACCAATAAAACAACTGGGGAGCAATTTATATCCCAGACGTAGGATCCAAGAAAAGGTTTCCATCTAGACAGTCCATACCCTCACAGGGACGACGCACAGGGTGACGTGGAATACCTGGTTCGGCTGACACGTGTCAGAAATGTTCACAGCATGACCGGCTACAAAAGGGACGTCGTGACCTTGGCTGTCACTCAGGAGCTTTTCTTATTGGGGAGCGAGAGGTGAATTCGTTCACAAATCATCGCCTGGTCTGCGGTTGGACTCTTGCGATCACCAAATTGTCAGCTACGGATCTTCGTTCTCACTCCTCTGTTGATCCAAAAGCTGCGGAGTCCGGCAATCTGCAGAGAAAAATTTGAAGAATTTGAGTTTTTGAGCCGGGCAATCTGCAGAGAAAAATTCGAAGAATTTGAGTGCCAGCATCGAATCCCCGGACTGA_-_ATGGCAACCACTGGCACCAATAACATGCAGGCTAAGCTGGTGCTTCTTGGTGATATGGGTACTGGAAAATCGAGCCTTGTTTTGCGATTTGTCAAAGGCCAATTTTTGGATTATCAGGAGTCGACAATTGGAGCAGCATTTTTCTCACAGACACTAGCAGTGAATGAGGTGACTGTAAAATTTGAGATATGGGACACTGCAGGACAGGAAAGATATCATAGCTTGGCGCCCATGTATTATCGTGGTGCTGCAGCAGCTATAATTGTTTATGACATAACAAATTTGGATTCTTTTGTCCGAGCAAAGAATTGGGTGCTGGAGCTCCAAAAACAAGGCAACCCAAATTTGGTTATGGCCCTTGCTGGAAATAAGGCTGATATGGCAGCAAAGAGGAAGGTCGAACCAGAGGAAGCTGAAACATATGCAAAGGAAAATGGTCTATTTTTCATGGAAACCTCAGCAAAGACGGCACAGAATGTCAATGAACTGTTCTATGAAATTGCGCGAAGATTACCTAAAGCCCGACCAGTGCAGCAGCCTGCAGGCATGGTTCTCACAGATAGACCTGCAGAGAGTGCTAAAACTTACTCTTGCTGCACATAA___GCCCTCGATTTCATGTCACTGAAAATTTGAAGATGCCACCTTCAGCTGTATGCAGTTATTCTATGCACATTATTTGCTACGGCTGTGATATCCGGAGGAGATGGTGGGGGGGTTTCAAGCTTTGTTTAGAACTTGCTTTAAGGAATTTTAGCGTTTATGGAGAAATGTAAAAATACATATTTTGGTGCTTAAATTAAATCTCTGTAGTGAGGTGCGATGGTCATTGAAAGCCTTCTGATATAACTCTTTGGTGCCATTTATGATGAGCTTATATTTAAATTGAAAAGCTGTGCTCTGTTTAAATACTCCGAGCTCGGAGAGGGTAGATCTCTTTTGATCCTGCAATGACATCTTGTGTTTGATTGATTGTACTAGACTATACTATGGGACGCTAAACTGTCATTTAAAAATGTGAGACTGTTTGTAACAAAGTCTTGCTATTGATACCTTGCATTGAAACTAATGTTTTCTTGAAGCATGATGAATAAATTGGCTAATAGTGTAGTCGTTCTGAACA

Fln Alignment:

sp_v1.1_unigene58668___MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNLDSFVRAKNWVLELQKQGNPNLVMALAGNKADMAAKRKVEPEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAESAKTYSCCT
A9NKR1_______________MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFVRAKNWVLELQKQGNPNLVMALAGNKADVAAKRKVEAEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAERARTYSCCS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1129		3		96	0.988113
1131			96	3	0.982166
1174	1		92		1.0
1208			1	91	1.0
1341		65	34		1.0
1374		1		94	0.95615
1375		1	3	94	0.95615
1378	5			94	0.999996
1380	94	5			0.999996
1383		7	92		1.0
1385	94		1	3	0.960243
1387			4	96	0.99411
1393			4	93	0.973796
1408	89	6		3	0.998304
1416	10		89		1.0
1420	18	70			1.0
1421	18	37		44	1.0
1422		37	48	14	1.0
1423	51	29		14	1.0
1424	29	14	48		1.0
1426		5	70		1.0
1427	75			25	1.0
1429	68			25	1.0
1431	5	70			1.0
1432	25	75			1.0
1433	68		31		1.0
1436	25		75		1.0
1441	6	68		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain