SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58596

Length: 1181 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58596

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U2 snrnp auxiliary factor, small subunit, putative; K12836 splicing factor U2AF 35 kDa subunit	-	-	7.00649e-43	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	u2 snrnp auxiliary small	-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	90%
Blast2go	binding	GO:0005488	Molecular Function	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTJ1

Fln msg: Overlapping hits, possible frame ERROR between 288 and 279, and possible frame ERROR between 410 and 681, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 273 - 312

Fln protein: VQCISAFHHFSSCLLFVNKSI**LMNPCGFISTKHSYLQDFYEDLFEELGKYGEIESLNVCDNLADHMVGNVYVQFREEEQAANALRSLQGRxxxxxPIIVDFSPVTDFREATCGQYEENTCNRGGYCNFMHLKKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGSAERRAKIEQWNREKEAQASSADVSYSMQNGGSYSNPQGYYDR*

Protein Length: 274

Fln nts: GTGCAATGCATTTCTGCCTTTCACCATTTTTCATCTTGTTTGCTTTTTGTAAACAAATCAATATGATAACTCATGAATCCTTGTGGTTTTATCTCAACTAAACATTCGTACCTGCAGGATTTTTATGAAGATTTGTTTGAAGAGCTCGGCAAGTATGGAGAAATCGAGAGTTTGAATGTTTGTGACAATTTGGCTGATCATATGGTTGGGAACGTGTATGTGCAATTTCGGGAAGAAGAGCAGGCTGCTAATGCTTTGCGATCTTTGCAAGGCAGGxxxxxxxxxxxxxxxCCAATCATAGTGGATTTCTCTCCTGTTACTGATTTTCGTGAAGCAACATGTGGACAATATGAAGAGAATACTTGTAATCGTGGCGGGTACTGCAACTTCATGCACTTGAAGAAAATAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGAAGGTAGTGCAGAGAGAAGAGCAAAAATTGAACAGTGGAACAGGGAAAAGGAAGCTCAAGCATCATCAGCAGATGTTAGTTATTCTATGCAAAATGGAGGGTCGTACTCGAATCCACAGGGTTATTATGACCGCTGATTGTGTTGGCTTCATCATTTTTGGGTTTGTTCTACTATTCCTCTACCATGTTTTGAATAACATGTGCATTCCTCTACCATCATCTATGCTGGTTAAATGAAGATGGCGATGAAACATGTGTATCAACTCTGATTGTATTTAGTTTCACTTTTCACTTTCTGTGATGTTATGAGAGGACGCCGGAATGCACACCGGTTTTGGGAGTCATTATATCAAACTATCTAGAGACTGTACTGATGTAACCGTGTTCTTTTCATGGATGTTATGTACATTGAAAATTTCTTTTTCTTTCGCTTTAGGTTTCTTATTCCTTTTCCTATGACGTGTGGTTTTTCATCGGTGATAACGTGCTTTGCATTTATT

Fln Alignment:

sp_v1.1_unigene58596___YLQDFYEDLFEELGKYGEIESLNVCDNLADHMVGNVYVQFREEEQAANALRSLQGRFxxxRPIIVDFSPVTDFREATCGQYEENTCNRGGYCNFMHLKKISxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGSAERRAKIEQWNREKEAQASSADVSYSMQNGGSYSNPQGYYDR
C0PTJ1_______________HFEDFYEDLFEELGKYGELESLNVCDNLADHMVGNVYVQFREEEQAANALRSLQGRFxxxRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGSAERRAKIEQWNREKEAQASSTIANYPMQNGGAYSNPQGYYDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain