SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58582

Length: 1165 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene58582 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipase D (EC:2.7.7.38 3.1.4.4)	-	-	54%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	phospholipase d alpha 1 precursor	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phospholipase D/Transphosphatidylase	IPR001736	-	0.0	71%
Blast2go	Phospholipase D	IPR015679	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Distance to subject end: 209 aas, your sequence is shorter than subject: 387 - 861

Fln protein: KPPRLWEELYEYLDGTKHFIYIAGWSVNTKITLVRDRERMIPGAEGVTLGELLKKKAEQGVRVLVLIWEDRTAVEFLRNQGLMKTHCDETFEYFKGTNVHCFLCPRLADHSLSPVQSVEIAAEFTHHQKTVSLDASIQGSENRQVVSFVGGIDLCDGRYDNEIHPLFRTLNTVYRDDFHQNNYKDADLEHGGPREPWHDAHSKIQGPAAYDVVTNFIQRWTKQADPSLLLKLEDLPGLLPPDAHFESPESWNVQIFRSIDDASVVGFPANPSDAPELGLVTVKDQVIDKSIQCAYIEAIRRARDFIYIENQYFFGSCASWDRDQDCGCLHLIPIEIALKVVSKIKARERFSVYVLNPMWPEGIPEGDTVQAILHWFRNTARMMYKMI

Protein Length: 388

Fln nts: ACAAGCCTCCGAGACTCTGGGAGGAATtGTACGAGtACTTGGATGGAaCCAAGCATTTTATATACATTGCCGGGTGGTCTGTAAATACCAAGATTACCCTaGTAAGGGATAGGGAAAGAATGATCCCTGGTGCAGAAGGTGTGACTTTGGGTGAGCTTCTGAAGAAAAAAGCGGAGCAGGGGGTTAGAGTTTTGGTCCTCATCTGGGAGGACAGGACGGCCGTGGAATTTCTcCGgAAtCAGGGgCTCATGAAAACCCACTGCGAcGAaACATTCGAGtATTTCAAGGGCACCAACGTTcATTGCTTTCTGTGTCCTAGACTTGCAGACCATTCGTTGAGTCCAGTCCAGAGTGTGGAAATTGCAGCCGAATTTACCCATCATCAGAAGACCGTGAGCCTGGACGCCAGCATTCAAGGCTCTGAAAATCGCCAGGTCGTGAGCTTCGTGGGAGGAATCGATTTGTGTGACGGGAGGTATGATAACGAGATCCATCCCCTGTTCAGAACCCTGAATACTGTTTACAGAGATGATTTTCATCAGAATAATTACAAAGACGCGGATCTTGAACATGGCGGCCCCAGGGAACCATGGCACGATGCCCATTCTAAAATCCAAGGCCCGGCTGCCTACGATGTTGTGACGAACTTTATTCAGCGCTGGACAAAGCAGGCCGATCCGAGCCTCCTCCTAAAACTCGAGGATTTACCGGGTCTCCTACCGCCGGACGCACATTTTGAAAGCCCGGAGTCTTGGAATGTTCAGATCTTCCGGTCCATAGACGATGCTTCCGTCGTGGGGTTCCCTGCCAATCCGTCCGATGCGCCGGAACTGGGACTGGTGACCGTGAAGGACCAGGTTATCGACAAGAGCATCCAGTGCGCCTATATCGAAGCCATCCGGCGAGCCAGGGACTTCATTTACATAGAGAATCAGTACTTCTTTGGCAGTTGCGCCTCCTGGGACCGAGACCAGGACTGCGGGTGCCTGCATCTCATTCCGATTGAGATTGCACTCAAGGTGGTTAGCAAGATAAAGGCCCGGGAGCGGTTCTCTGTGTATGTGCTGAATCCGATGTGGCCGGAGGGGATACCCGAGGGGGATACCGTGCAGGCCATCCTGCATTGGTTCAGGAACACCGCGCGCATGATGTATAAGATGATTGG

Fln Alignment:

sp_v1.1_unigene58582___RLWEELYEYLDGTKHFIYIAGWSVNTKITLVRDRERMIPGAEGVTLGELLKKKAEQGVRVLVLIWEDRTAVE--FLRNQGLMKTHCDETFEYFKGTNVHCFLCPRLADHSLSPVQSVEIAAEFTHHQKTVSLDASIQGSENRQVVSFVGGIDLCDGRYDNEIHPLFRTLNTVYRDDFHQNNYKDADLEHGGPREPWHDAHSKIQGPAAYDVVTNFIQRWTKQA------------------------------XXXXXXXXXXXXXXXXXDAHFESPESWNVQIFRSIDDASVVGFPANPSDAPELGLVTVKDQVIDKSIQCAYIEAIRRARDFIYIENQYFFGSCASWDRDQDCGCLHLIPIEIALKVVSKIKARERFSVYVLNPMWPEGIPEGDTVQAILHWFRNTARMMYKMI
B8LQ49_______________KCWEEICHAILEAHHLVYITGWSIYHKVKLVREPTRPLPLGGDLNLGELLKFKSQEGVRVLLLVWDDKTSHHNMLLKTEGVMQTHDEETKKFFKHSSVQCVLAPRYASTKLSWFKQQVVGTLYTHHQKNVIVDSQAQGN-YRKLTAFIGGLDLCDGRYDTPEHRLFKGLETVYEEDYHNPTF-TTNADAHGPRQPWHDLHSKIEGPAAYDILTNFEQRWRKATKLHRFAKRFRKVANRYTDDSLIQIARISWILSPSTTQNLPDGDPKLWVSKEDDPDNWHVQVFRSIDSGSVKGFPKSVQDAQNQNLVCRKNLLVDKSIHTAYVKAIRSAQHFIYIENQYFVGSSYNWPSYKNAGAHNLIPMEIALKVADKIRKGERFAVYVVIPMWPEGNPTGASVQEILFWQSQTMEMMYGII

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
960		75		25	0.996473
963	25		75		0.996473
1020		75		25	0.996473
1065	75		25		0.996473
1074	33	33		33	0.997753
1085			25	75	0.996473
1089	75		25		0.996473
1104	33		66		0.997452
1116	66			33	0.997452
1124			33	66	0.997452
1125	33		66		0.997452
1128			33	66	0.997452
1129	33	66			0.997452
1132			33	66	0.997452
1138			33	66	0.997452
1141	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain