SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58473

Length: 540 nt

UniGene Fasta

>sp_v1.1_unigene58473
TTGCATATGGTAGAGATTGGGCAACACCAGAGGAAATACAGGCTGCTGCAGAGCTTGCTAATGCGGAAAAATTTATTAGTAACATGCCTCAAGTTTGTAGAAATAGATCTTCATTACTGGTGATTGGTATGTTCCTCCTTGTGGAAATGTGTTTCTTTTGCACAACATTTTGTGTATGCTGACAGTCATGGTTGCTCTTTTCAGGGGTTTGATACCCAATTCGTAGAGCATGGTACCCAATTATATGGAGTTCAAAAGCAAGGGATTGGAATTGCGTGGGCTATTTTAAAAGATGCCCGAATTCTCCTCGTCGATGTAGCTGCCAGTGCCTTGGATGCAGACTCTGAAAGAGTGGTTCAACCGTTCAAGAAGCTGTTGATAAAATTATGATAAACAGAACAACAGTTATTGTTGCAGATCGTCTGGCTACTGTCAGAAATGCTGATATGATTGCTGTCGTCCAGCGTGGCTGTATTGTTGAAAAGGGTTCACACTCCCAGCTCATCATGATTCCATCTGGGCCATTCTCCCAGCTTATAC

Ace file of the UniGene sp_v1.1_unigene58473

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance protein 1, 2, putative n=1 Tax=Ricinus communis RepID=B9RN48_RICCO	-	-	3.0e-32	67%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	64%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	1.35335e-34	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.35335e-34	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	1.35335e-34	82%
Blast2go	root hair elongation	GO:0048767	Biological Process	1.35335e-34	82%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	1.35335e-34	82%
Blast2go	gravitropism	GO:0009630	Biological Process	1.35335e-34	82%
Blast2go	auxin efflux	GO:0010315	Biological Process	1.35335e-34	82%
Blast2go	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	1.35335e-34	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.35335e-34	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 693 aas, your sequence is shorter than subject: 170 - 1316

Fln protein: AYGRDWATPEEIQAAAELANAEKFISNMPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGFDTQFVEHGTQLYGVQKQGIGIAWAILKDARILLVDVAASALDADSERVVQPFKKLLIKL**TEQQLLLQIVWLLSEMLI*LLSSSVAVLLKRVHTPSSS*

Protein Length: 171

Fln nts: TTGCATATGGTAGAGATTGGGCAACACCAGAGGAAATACAGGCTGCTGCAGAGCTTGCTAATGCGGAAAAATTTATTAGTAACATGCCTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCAGGGGTTTGATACCCAATTCGTAGAGCATGGTACCCAATTATATGGAGTTCAAAAGCAAGGGATTGGAATTGCGTGGGCTATTTTAAAAGATGCCCGAATTCTCCTCGTCGATGTAGCTGCCAGTGCCTTGGATGCAGACTCTGAAAGAGTGGTTCAACCGTTCAAGAAGCTGTTGATAAAATTATGATAAACAGAACAACAGTTATTGTTGCAGATCGTCTGGCTACTGTCAGAAATGCTGATATGATTGCTGTCGTCCAGCGTGGCTGTATTGTTGAAAAGGGTTCACACTCCCAGCTCATCATGATTCCATCTGGGCCATTCTCCCAGCTTATAC

Fln Alignment:

sp_v1.1_unigene58473___AYGRDWA-TPEEIQAAAELANAEKFISNMPQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGFDTQFVEHGTQLYGVQKQGIGIAWAILKDARIXXXXXXXXXXXXXXERVVQ
E6Y0T0_______________AYGKEGAVTDEQIIAAAEAANAHKFISSLPQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain