SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58421

Length: 488 nt

UniGene Fasta

>sp_v1.1_unigene58421
TGTAGATCCATCCTTCCCCTCCACTCACAGGACCATTGATGCAGAGCTCTATCAGCGGATACGATGGAGCTACAATGATTTGCCCGATAATCTGAAGATGTGTTTCTTATATTGTGCTGCCTTTCCTGAGGATGCACGTATTGATGTGGAGACGCTGGTGGAGATGTGGACAGCAGAAAGATTGGTGCCTCAAAAGGGGACAACTTACTTCATGGATGTTGGGCGGGAATACATAGAAGCACTGGAAGATAGGTGCTTGATTGAATATGCAGGTAAGTATAAGCTGGATATAAAAGTTCATGATGTACTACGGGATATGGCAATATATGTAGGCCAAGGAGAGCAGAACTGGTTATTTGAAGCAGGTCAAGGTCTGCAACATTTTCCATGTGAAGAAGAGACCAGGGATCGCAAAAGAATCTCCGTTCTCGGCAATGAAATTAGTGATATGCCAACAGATTTGAAGTGTCCAACACTCGTCAGTTTAG

Ace file of the UniGene sp_v1.1_unigene58421

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	disease resistance protein (NBS-LRR class), putative	-	-	9.0e-18	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	disease resistance protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NB-ARC	IPR002182	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLB4

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 162 - 576

Fln protein: VDPSFPSTHRTIDAELYQRIRWSYNDLPDNLKMCFLYCAAFPEDARIDVETLVEMWTAERLVPQKGTTYFMDVGREYIEALEDRCLIEYAGKYKLDIKVHDVLRDMAIYVGQGEQNWLFEAGQGLQHFPCEEETRDRKRISVLGNEISDMPTDLKCPTLVSL

Protein Length: 163

Fln nts: TGTAGATCCATCCTTCCCCTCCACTCACAGGACCATTGATGCAGAGCTCTATCAGCGGATACGATGGAGCTACAATGATTTGCCCGATAATCTGAAGATGTGTTTCTTATATTGTGCTGCCTTTCCTGAGGATGCACGTATTGATGTGGAGACGCTGGTGGAGATGTGGACAGCAGAAAGATTGGTGCCTCAAAAGGGGACAACTTACTTCATGGATGTTGGGCGGGAATACATAGAAGCACTGGAAGATAGGTGCTTGATTGAATATGCAGGTAAGTATAAGCTGGATATAAAAGTTCATGATGTACTACGGGATATGGCAATATATGTAGGCCAAGGAGAGCAGAACTGGTTATTTGAAGCAGGTCAAGGTCTGCAACATTTTCCATGTGAAGAAGAGACCAGGGATCGCAAAAGAATCTCCGTTCTCGGCAATGAAATTAGTGATATGCCAACAGATTTGAAGTGTCCAACACTCGTCAGTTTAG

Fln Alignment:

sp_v1.1_unigene58421___VDPSFPSTHRTIDAELYQRIRWSYNDLPDNLKMCFLYCAAFPEDARIDVETLVEMWTAERLVPQKGTTYFMDVGREYIEALEDRCLIEYAGKYKLDIKVHDVLRDMAIYVGQGEQNWLFEAGQGLQHFPCEEETRDRKRISVLGNEISDMPTDLKCPTL
B8LLB4_______________VDPSFPSTHPTIDAELYQRVRWSYHDLPNNLKMCFLYCAAFPEDAWIQVETLVEMWTAEGLVPRKGTTYFMDVGREYIDALVDRCLIEYVDAKNEYIKVHDILRDVAIYVGQEEENWLFLSGQHLQHFPSEEETRDRKRISVLGTEISDLPPDFECPTL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain