SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58417

Length: 403 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene58417
TATTCATTCCCTGGCCAAAGGTGTTGAGGTACGCAGTATGTCATTAGAAACCCTAAGAGAAACAACAAACTGCTTGCTGGAAATGGACCAGGAGGTCGTTAAGGTCTTATTGGGATGCAAAGAGGACATATGGAAGAACCAGGATCTGTTAAATTGGTCGAAGAATATTTCGAAAACAGTTTACAGACCCTAGATTTCTGTACTGTGCTGGAGAATTGTCTCAGAAAGGCTAGAGACAACCAATTGATTATTCAAATCGCGCTTCAACAGCTTCCGGCGCAAGGTCCGCCTTCAGAGGCGCAGTGTCAGAGAATACTGGAGGAACTGAAAAATTTCAGAAGTACCGGTAGCCCGTTCTCTGAGGATTTCTTTAAGCATTTCGAGTCTGTTTACAAAAGGCACA

Ace file of the UniGene sp_v1.1_unigene58417 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF677 multi-domain protein	-	-	1.0e-20	40%
FL-Next	sp=UPF0496 protein At4g34320; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	protein	-	-	4.02761e-31	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome	GO:0005777	Cellular Component	4.02761e-31	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF677	IPR007749	-	4.02761e-31	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SYZ7

Fln msg: Separated hits, possible frame ERROR between 148 and 151, Distance to subject end: 189 aas, your sequence is shorter than subject: 134 - 374

Fln protein: IHSLAKGVEVRSMSLETLRETTNCLLEMDQEVVKVLLGCKEDIWKNQDxxKLVEEYFENSLQTLDFCTVLENCLRKARDNQLIIQIALQQLPAQGPPSEAQCQRILEELKNFRSTGSPFSEDFFKHFESVYKRH

Protein Length: 135

Fln nts: TATTCATTCCCTGGCCAAAGGTGTTGAGGTACGCAGTATGTCATTAGAAACCCTAAGAGAAACAACAAACTGCTTGCTGGAAATGGACCAGGAGGTCGTTAAGGTCTTATTGGGATGCAAAGAGGACATATGGAAGAACCAGGATCTxxxTAAATTGGTCGAAGAATATTTCGAAAACAGTTTACAGACCCTAGATTTCTGTACTGTGCTGGAGAATTGTCTCAGAAAGGCTAGAGACAACCAATTGATTATTCAAATCGCGCTTCAACAGCTTCCGGCGCAAGGTCCGCCTTCAGAGGCGCAGTGTCAGAGAATACTGGAGGAACTGAAAAATTTCAGAAGTACCGGTAGCCCGTTCTCTGAGGATTTCTTTAAGCATTTCGAGTCTGTTTACAAAAGGCACA

Fln Alignment:

sp_v1.1_unigene58417___IHSLAKGVEVRSMSLETLRETTNCLLEMDQEVVKVLLGCKEDIWKNQDLxKLVEEYFENSLQTLDFCTVLENCLRKARDNXXXXXXXXXXXXXXXXPSEAQ-CQRILEELKNFRSTGSPFSEDFFKHFESVYKR
Q9SYZ7_______________ISTLATGVEVRALSFDSLKEVTQCLLEMNQEVVKVILDCKKDIWKNQEMxELVEDYFENSLKTLDFCAALEKGLRRARDSHLLILVALQQFEDESLVQGGNGYKKTLEELKNFKDAESPFNEDFFKMFQSVYKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain