SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58292

Length: 554 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene58292
CGTCGTGACCTTGGCTGTCACTCATGTCAGGTGTCAACATTGTGGACAATATGTTTAGTGGCTCTAGGAAGGGCGTGGACATCGTTCAATTGGTAGGGCGATTTGAATCGATTGATCAGACAGTTGTTGACAGGAACAATGTGCATGGAATGACGCTTAAGTCGACCGTGGCTCGAGCTACAGTTAAGGGCAACGGACCACATGGGCCATAGATTTTAATCGCTTCCTGCTCTTCCCCAACCGTATTCAGCATGTTCAGTATTCTTTCTATACATTTGATGCTTTGTTTCCGAGGCATGCTCTCAGAAATGTGTCTGAGAACAAAGTGGTGATCGAGGCGGATACCCAAGTATCTGCAACTATTGCAGTGCAGGTCGATCAGAGTGCCACTTTTGCTCAAGGAAGTGGGATTTATTCCTAGACACGAGCTCTCTTGAGCAATAGAACTCCATTCAAAGGGCTTTTAGGCCCAAGGTTATGGATGGTAAATATTTTCCAATAAGGGTATACACCCTTTTCCTCGATTCAATTCAAAACCAACCGTGTTAATTAGT

Ace file of the UniGene sp_v1.1_unigene58292

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	QRT3; QRT3 (QUARTET 3); polygalacturonase	-	-	3.0e-26	51%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	protein	-	-	3.83676e-32	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	3.83676e-32	71%

Source	KEGGs	Term	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040	3.83676e-32	71%
Blast2go	Starch and sucrose metabolism	00500	3.83676e-32	71%
Blast2go	Metabolic pathways	01100	3.83676e-32	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	3.83676e-32	71%
Blast2go	pollen exine formation	GO:0010584	Biological Process	3.83676e-32	71%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	3.83676e-32	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O49432

Fln msg: Overlapping hits, possible frame ERROR between 197 and 188, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 140 - 481

Fln protein: S*PWLSLMSGVNIVDNMFSGSRKGVDIVQLVGRFESIDQTVVDRNNVHGMTLKSTVARATVxxxxxTWAIDFNRFLLFPNRIQHVQYSFYTFDALFPRHALRNVSENKVVIEADTQVSATIAVQVDQSATFAQGSGIYS*

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCAGGTGTCAACATTGTGGACAATATGTTTAGTGGCTCTAGGAAGGGCGTGGACATCGTTCAATTGGTAGGGCGATTTGAATCGATTGATCAGACAGTTGTTGACAGGAACAATGTGCATGGAATGACGCTTAAGTCGACCGTGGCTCGAGCTACAGTTxxxxxxxxxxxxxxxACATGGGCCATAGATTTTAATCGCTTCCTGCTCTTCCCCAACCGTATTCAGCATGTTCAGTATTCTTTCTATACATTTGATGCTTTGTTTCCGAGGCATGCTCTCAGAAATGTGTCTGAGAACAAAGTGGTGATCGAGGCGGATACCCAAGTATCTGCAACTATTGCAGTGCAGGTCGATCAGAGTGCCACTTTTGCTCAAGGAAGTGGGATTTATTCCTAGACACGAGCTCTCTTGAGCAATAGAACTCCATTCAAAGGGCTTTTAGGCCCAAGGTTATGGATGGTAAATATTTTCCAATAAGGGTATACACCCTTTTCCTCGATTCAATTCAAAACCAACCGTGTTAATTAGT

Fln Alignment:

sp_v1.1_unigene58292___GVNIVDNMFSGSRKGVDIVQLVGR---FESIDQTVVDRNNVHGMTLKSTVARATVKxxxTTWAIDFNRFLLFPNRIQHVQYSFYTFDA-LFPRHALRNVSENKVVIEADTQVSATIAVQVDQ
O49432_______________GVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDxxxTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain