SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58264

Length: 524 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene58264
AGCTACAGCACATCAACCTGAAAAGCTGCGGTACGTTGGAGAGGCTTCCCGACTCCTTCGGGAATTTGTCGAGTCTAGAACACATCCACCTATCTGAAATATTAAGCTTGAATACATGGTTCTGCCCGCAAATTGCCGCATCGAAGTGTTGTCCTCCCCTCCCTAAATTGCTCACCAGTGGTCCGTACTGTTGTGGCTTATAAACTTAGGAGAATGGCCAAGTGCCATTGCAGAGTCAAGCCATTTTGAAAAGTTGGTGTTAGAAGTGCCTTTTATAGAAGCGCTGCCGTCTTCTTTCGGACGTGACCTAAGGAACTTGAAGCATTTGGAGCTGCAAAGATGCCAGAGTTTGAAACATTTACAGGATTCCTTTCTCCTCATGGATCAGTTGACAAAGTTGATTGTGGACTGTCCGTTACAAGAAACTGAATTTTGAAACGGTTGAAGGCGGAAGTGAAACAATGACTACACTCAGGAGGACAAGGAACATTAAGTAATTTGGAGAGGGGCCTGCTTCATCTCCA

Ace file of the UniGene sp_v1.1_unigene58264 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative disease resistance protein n=1 Tax=Arabidopsis thaliana RepID=Q9M8X8_ARATH	-	-	7.0e-05	50%
FL-Next	tr=Putative TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	52%
Blast2go	tir-nbs-lrr protein	-	-	9.38564e-28	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E9NZS6

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected STOP codon at 3' end. Distance to subject end: 560 aas, your sequence is shorter than subject: 145 - 1490

Fln protein: LQHINLKSCGTLERLPDSFGNLSSLEHIHLSEILxxxYMVLPANCRIEVLSSPP*IAHQWSVLLWLINLGEWPSAIAESSHFEKLVLEVPFIEALPSSFGRDLRNLKHLELQRCQSLKHLQDSFLLMDQLTKLIVDCPLQETEF*

Protein Length: 146

Fln nts: AGCTACAGCACATCAACCTGAAAAGCTGCGGTACGTTGGAGAGGCTTCCCGACTCCTTCGGGAATTTGTCGAGTCTAGAACACATCCACCTATCTGAAATATTAxxxxxxxxxTACATGGTTCTGCCCGCAAATTGCCGCATCGAAGTGTTGTCCTCCCCTCCCTAAATTGCTCACCAGTGGTCCGTACTGTTGTGGCTTATAAACTTAGGAGAATGGCCAAGTGCCATTGCAGAGTCAAGCCATTTTGAAAAGTTGGTGTTAGAAGTGCCTTTTATAGAAGCGCTGCCGTCTTCTTTCGGACGTGACCTAAGGAACTTGAAGCATTTGGAGCTGCAAAGATGCCAGAGTTTGAAACATTTACAGGATTCCTTTCTCCTCATGGATCAGTTGACAAAGTTGATTGTGGACTGTCCGTTACAAGAAACTGAATTTTGAAACGGTTGAAGGCGGAAGTGAAACAATGACTACACTCAGGAGGACAAGGAACATTAAGTAATTTGGAGAGGGGCCTGCTTCATCTCCA

Fln Alignment:

sp_v1.1_unigene58264___LQHINLKSCGTLERLPDSFGNLSSLEHIHLSEILSLxxxxxxxxxxxxLEYMVLPANCRIEVLSSPP*IAHQWS---VLLWLINLGEWPSAIAESSHFEKLVLEVPFIEALPSSFGRDLRNLKHLELQRCQSLKHLQDSFLLMDQLTKLIV-DCPLQETEF
E9NZS6_______________LEHIDLSRCSQLERLPDSFGNLIKLKYLDLNNCSNLxxxxxxxxxxxxLAYIGLQGCHKIEVLPSQ--IVNQPSREGLYVSLRNLKEWPSAIGEPSSLERLVLETPLLQTLPPSFGRDLMNLKHLELWSCRSLRRLPDSFLLLDQLIKLIVEDCSLQYLHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain