SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58215

Length: 669 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58215

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium ATPase n=1 Tax=Nicotiana benthamiana RepID=D5JXY5_NICBE	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	autoinhibited calcium atpase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	88%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	88%
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	88%
Blast2go	ATPase, P-type, cytoplasmic transduction domain A	IPR023300	-	88%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
389	60	40			1.0
391		60		40	1.0
393			40	60	1.0
395			50	50	1.0
396	40	60			1.0
399		40		60	1.0
403			40	60	1.0
405	60			40	1.0
407			60	40	1.0
408	60	40			1.0
411	60			40	1.0
412	60	40			1.0
429			25	75	0.996478
508	66			33	0.997452
574		66		33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain