SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58211

Length: 201 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene58211
AGAAGCTGGAGTTGAAAAAGAATATGGACTTCAAAAGAGAGTTGAAGCAGTTCAAAATGTCCGCAGCTTGACCAAATTGGACATGAAATTGAATAGTTTAACTCCTAAGATTGAAGTTGATCCCGAGAGTTTCGTAGTTACCGCAGATGGAGAGACCCTAAACTGTGCAGCTGCTACTACACTTCCTTTGTCAAAGAATTA

Ace file of the UniGene sp_v1.1_unigene58211

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Urease (Fragment) n=2 Tax=Vitis vinifera RepID=D7TAQ4_VITVI	-	-	1.0e-17	68%
FL-Next	sp=Urease; Canavalia ensiformis (Jack bean) (Horse bean).	-	-	0.0	67%
Blast2go	urease	-	-	1.51263e-17	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Urease.	EC:3.5.1.5	-	1.51263e-17	76%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	1.51263e-17	76%
Blast2go	Arginine and proline metabolism	00330	1.51263e-17	76%
Blast2go	Atrazine degradation	00791	1.51263e-17	76%
Blast2go	Metabolic pathways	01100	1.51263e-17	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	1.51263e-17	76%
Blast2go	urease activity	GO:0009039	Molecular Function	1.51263e-17	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Urease, alpha subunit, C-terminal	IPR017951	-	1.51263e-17	76%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P07374

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 66 - 840

Fln protein: EAGVEKEYGLQKRVEAVQNVRSLTKLDMKLNSLTPKIEVDPESFVVTADGETLNCAAATTLPLSKN

Protein Length: 67

Fln nts: AGAAGCTGGAGTTGAAAAAGAATATGGACTTCAAAAGAGAGTTGAAGCAGTTCAAAATGTCCGCAGCTTGACCAAATTGGACATGAAATTGAATAGTTTAACTCCTAAGATTGAAGTTGATCCCGAGAGTTTCGTAGTTACCGCAGATGGAGAGACCCTAAACTGTGCAGCTGCTACTACACTTCCTTTGTCAAAGAATTA

Fln Alignment:

sp_v1.1_unigene58211___YGLQKRVEAVQNVRSLTKLDMKLNSLTPKIEVDPESFVVTADGETLNCAAATTLPLSKN
P07374_______________YGLNKRVEAVSNVRKLTKLDMKLNDALPEITVDPESYTVKADGKLLCVSEATTVPLSRN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
64		66		33	0.997452
77		25		75	0.99649
98			33	66	0.997452
99		33		66	0.997452
124		66		33	0.997452
128	66	33			0.997452
129	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain