SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58186

Length: 1041 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene58186

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box protein abstrakt, putative; K13116 ATP-dependent RNA helicase DDX41 [EC:3.6.4.13]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	dead-box protein abstrakt	-	-	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	84%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	84%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: Distance to subject end: 284 aas, your sequence is shorter than subject: 308 - 504

Fln protein: MSGQDALTSPRAHQAAIDESNFHGGSYQFDGAGNEVPENLPENAEEEDDYAEYIPIKKRRMMEAQKILQRKGNGSLLQDADQAAALTESKPSLLVKASQLKKDLPEISPMEQIVQQEKDMIERLSDRKTLMSVWELAKGIEYHDPIVTGWKPPTAIRHMTEKECEAVRKQWHILVDGDSIPPPIKNFKDMRLPEPILKKLKAKGIVQPTPVQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLILVALQEEVSMPIIPGEGPFGLVICPSRELARQTFEVVEEFVAVLQERGYPELRPMLCIGGIDMR

Protein Length: 309

Fln nts: CGTCTGACCTTGGCTGTCACTCAAAAAAAGTTTGGACCGCAGTCTGATCCGCTGCTCCACGGGAGGTTTCGAGTTTAAGTTCGAGTTCGGCCTCATCGGCTTAGTGCGTGTCAAA_-_ATGAGTGGACAAGATGCTCTAACCTCCCCGCGGGCACACCAGGCGGCCATTGACGAGAGCAATTTTCATGGCGGCAGTTACCAGTTCGACGGCGCTGGAAATGAAGTTCCCGAAAACCTTCCAGAAAACGCCGAAGAAGAAGACGATTACGCAGAGTACATCCCCATTAAGAAGCGAAGAATGATGGAAGCCCAAAAGATTCTACAGAGGAAGGGCAATGGTTCTCTGTTACAGGACGCCGATCAAGCTGCGGCTTTAACAGAGTCAAAACCTAGCCTGCTCGTAAAGGCTTCTCAGCTGAAGAAAGATTTACCAGAAATCAGTCCCATGGAGCAGATCGTACAGCAGGAAAAAGATATGATTGAGCGTCTCTCTGATAGGAAGACTTTGATGTCTGTGTGGGAATTGGCCAAGGGAATTGAGTATCACGATCCAATTGTAACTGGTTGGAAACCTCCCACTGCCATACGCCATATGACCGAGAAGGAATGCGAGGCGGTACGAAAACAGTGGCATATTCTTGTCGACGGTGATTCAATTCCTCCTCCTATTAAGAATTTCAAGGATATGAGGCTTCCGGAACCGATTTTGAAGAAGCTTAAAGCCAAAGGAATTGTTCAGCCGACTCCTGTGCAGGTACAGGGGCTTCCTGTGGTACTTTCAGGCAGAGATATGATAGGCATCGCGTTTACTGGCTCGGGGAAAACTCTGGTCTTCGTCCTGCCTCTGATTTTGGTTGCTTTACAGGAAGAGGTGTCTATGCCAATAATTCCCGGCGAAGGGCCCTTTGGATTGGTGATTTGCCCGTCTCGCGAGCTTGCGAGGCAGACATTCGAGGTTGTGGAGGAGTTTGTGGCCGTCTTGCAGGAGCGGGGGTATCCGGAACTGCGGCCGATGCTCTGCATCGGAGGCATAGATATGAGATC

Fln Alignment:

sp_v1.1_unigene58186___IRHMTEKECEAVRKQWHILVDGDSIPPPIKNFKDMRLPEPILKKLKAKGIVQPTPVQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLILVALQEEVSMPIIPGEGPFGLVICPSRELARQTFEVVEEFVA
B8LKZ7_______________IASMTEDEVREYRNRREITIDGRDVPKPVKNFGDAGFPDYVIEEIVKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI---VHVNAQPYLAPGDGPIVLVLAPTRELAVQIQQEAAKFGA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain