SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58177

Length: 250 nt

UniGene Fasta

>sp_v1.1_unigene58177
TTTAGTTGCACATTGTGACAAAAGAATCCAGCAAGCAAATTGCAGCTGGGATTGTTACCCTTGGAGACATGGGGTACAAGACTTTGACCAAGTACTGCTCAGAGCTTCTTACTGAGGGTGGTAGCTCTCCTGGATCAGGAAGTCCACATTGGAAAAACAATACCAATGCTCTAGTGGGACATGCATATGAGCCTGAGCATGGCGGGAATGGTAATTGTGAAGGATTATGTTAGCAAAGCAGTTATTGCTC

Ace file of the UniGene sp_v1.1_unigene58177

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	breast carcinoma amplified sequence, putative	-	-	9.0e-09	56%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9I7G0

Fln msg: Overlapping hits, possible frame ERROR between 206 and 205, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 364 aas, your sequence is shorter than subject: 83 - 742

Fln protein: *LHIVTKESSKQIAAGIVTLGDMGYKTLTKYCSELLTEGGSSPGSGSPHWKNNTNALVGHAYEPEHGxxMVIVKDYVSKAVIA

Protein Length: 84

Fln nts: TTTAGTTGCACATTGTGACAAAAGAATCCAGCAAGCAAATTGCAGCTGGGATTGTTACCCTTGGAGACATGGGGTACAAGACTTTGACCAAGTACTGCTCAGAGCTTCTTACTGAGGGTGGTAGCTCTCCTGGATCAGGAAGTCCACATTGGAAAAACAATACCAATGCTCTAGTGGGACATGCATATGAGCCTGAGCATGGCxxxxxxATGGTAATTGTGAAGGATTATGTTAGCAAAGCAGTTATTGCTC

Fln Alignment:

sp_v1.1_unigene58177___KESSKQIAAGIVTLGDMGYKTLTKYCSELLTEXXXXXXXXXXHWKNNTNALVGHAYEPEHGxMVIVKDYVSKAVIA
B9I7G0_______________KESSKQLAAGIVTLGDMGYKKLSSYCSELLPDSHGSLQSGNPGWKSN-GTVNGHFPDADNIxMVVVRDIVSKLVIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain