SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58169

Length: 302 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene58169
ATGGGGACGAAACTACATGGGGCAGAGTGGAATCATGAGTTGCAGAATGAAGATTTTGATGCCAATCATATGTATATTTTGCCTTCAAATCCAGTATGGAAGGCAAGAAAATGGAATATATACTGCTGCAGAAGAATGGCAATGCATGGATAAAACTTCTTCCTCAAAGTTATTGATCAAAGGAGGGACCGTTGTTAATGCTGACCGCCAACAACTGGCAGATGTATACATTGAAGATGGAGTTGTTGTTGCAGTTCAACCCAACATCAAGGTCGCAGATGAAGTTCGTATCCTTGATGCCA

Ace file of the UniGene sp_v1.1_unigene58169

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2]	-	-	5.0e-13	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	dihydropyrimidinase dhpase dihydropyrimidine amidohydrolase hydantoinase	-	-	1.18757e-38	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydropyrimidinase.	EC:3.5.2.2	-	1.18757e-38	89%

Source	KEGGs	Term	e value	Identity
Blast2go	Pyrimidine metabolism	00240	1.18757e-38	89%
Blast2go	beta-Alanine metabolism	00410	1.18757e-38	89%
Blast2go	Pantothenate and CoA biosynthesis	00770	1.18757e-38	89%
Blast2go	Drug metabolism - other enzymes	00983	1.18757e-38	89%
Blast2go	Metabolic pathways	01100	1.18757e-38	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	Dihydropyrimidinase.	EC:3.5.2.2	-	5.0e-13	72%

Source	KEGGs	Term	e value	Identity
AutoFact	Pyrimidine metabolism	00240	5.0e-13	72%
AutoFact	beta-Alanine metabolism	00410	5.0e-13	72%
AutoFact	Pantothenate and CoA biosynthesis	00770	5.0e-13	72%
AutoFact	Drug metabolism - other enzymes	00983	5.0e-13	72%
AutoFact	Metabolic pathways	01100	5.0e-13	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	uracil catabolic process	GO:0006212	Biological Process	1.18757e-38	89%
Blast2go	cellular response to nitrogen levels	GO:0043562	Biological Process	1.18757e-38	89%
Blast2go	dihydropyrimidinase activity	GO:0004157	Molecular Function	1.18757e-38	89%
Blast2go	endomembrane system	GO:0012505	Cellular Component	1.18757e-38	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Metal-dependent hydrolase, composite domain	IPR011059	-	1.18757e-38	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK4

Fln msg: Distance to subject end: 435 aas, your sequence is shorter than subject: 95 - 530

Fln protein: MGQSGIMSCRMKILMPIICIFCLQIQYGRQENGIYTAAEEWQCMDKTSSSKLLIKGGTVVNADRQQLADVYIEDGVVVAVQPNIKVADEVRILDA

Protein Length: 96

Fln nts: ATGGGGACGAAACTAC_-_ATGGGGCAGAGTGGAATCATGAGTTGCAGAATGAAGATTTTGATGCCAATCATATGTATATTTTGCCTTCAAATCCAGTATGGAAGGCAAGAAAATGGAATATATACTGCTGCAGAAGAATGGCAATGCATGGATAAAACTTCTTCCTCAAAGTTATTGATCAAAGGAGGGACCGTTGTTAATGCTGACCGCCAACAACTGGCAGATGTATACATTGAAGATGGAGTTGTTGTTGCAGTTCAACCCAACATCAAGGTCGCAGATGAAGTTCGTATCCTTGATGCCA

Fln Alignment:

sp_v1.1_unigene58169___MGQSGIMSCRMKILMPIICIFCLQIQYGRQENGIYTAAEEWQCMDKTSSSKLLIKGGTVVNADRQQLADVYIEDGVVVAVQPNIKVADEVRILDA
B8LLK4_______________MGQSGIMSCRMEILLLIICAFCLQINYGSQENGICTAAEECQCMDKTSSSKLLNKGGTVVNADRQQQADIYIEDGVVVEVQPNIKVADEVRVLDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain