SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58040

Length: 480 nt

UniGene Fasta

>sp_v1.1_unigene58040
ATGGGGGAACTTCGACGGAGCCGTTGCGAAGAAATGGTTCTTCCCACCACGACCATCATCACAGCATTTTGAAAAATAAATGAACTCAGACGATCAAATGTCTAGCTCTGCGGCAGGTTCTAGGGTCGAGGGCGATCCTCCTGCAGTGCGTGTGTACACCGTCTGCGATGAATCAAGATATATAATAGTGAGAAACGTTCCAGCATTGGGCTGTATTGATGAACTTGTGAAGTTGTTTGGACAATTTGGACCCATAGAAGAGTATAGGCTTTTGGATGAGGAAGAATGTGAACCTTTTACTGATGTTTATTGGATCAAGTTTGTACATATCAGCAATGCAAGGTTTGCAAAGAGAAAGCTTGACGAGTTCCAGTTCCTGGGAAATCTACTGCAAGTAACTTATGCTCCTGAATATGAAACTNTTTCAGATACAAAAGCAAGTTGGAGGAGCGGCGACATACAGTGCTAAACNGATTAAAT

Ace file of the UniGene sp_v1.1_unigene58040

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleic acid binding protein, putative	-	-	2.0e-31	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	72%
Blast2go	nucleic acid binding protein	-	-	6.23867e-32	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	6.23867e-32	80%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	6.23867e-32	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7TDI3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 108 aas, your sequence is shorter than subject: 130 - 230

Fln protein: MNSDDQMSSSAAGSRVEGDPPAVRVYTVCDESRYIIVRNVPALGCIDELVKLFGQFGPIEEYRLLDEEECEPFTDVYWIKFVHISNARFAKRKLDEFQFLGNLLQVTYAPEYETISDTKASWRSGDIQC*

Protein Length: 131

Fln nts: ATGGGGGAACTTCGACGGAGCCGTTGCGAAGAAATGGTTCTTCCCACCACGACCATCATCACAGCATTTTGAAAAATAA_-_ATGAACTCAGACGATCAAATGTCTAGCTCTGCGGCAGGTTCTAGGGTCGAGGGCGATCCTCCTGCAGTGCGTGTGTACACCGTCTGCGATGAATCAAGATATATAATAGTGAGAAACGTTCCAGCATTGGGCTGTATTGATGAACTTGTGAAGTTGTTTGGACAATTTGGACCCATAGAAGAGTATAGGCTTTTGGATGAGGAAGAATGTGAACCTTTTACTGATGTTTATTGGATCAAGTTTGTACATATCAGCAATGCAAGGTTTGCAAAGAGAAAGCTTGACGAGTTCCAGTTCCTGGGAAATCTACTGCAAGTAACTTATGCTCCTGAATATGAAACTaTTTCAGATACAAAAGCAAGTTGGAGGAGCGGCGACATACAGTGCTAAACcGATTAAAT

Fln Alignment:

sp_v1.1_unigene58040___DPPAVRVYTVCDESRYIIVRNVPALGCIDELVKLFGQFGPIXXXXXXXXXXXXPFTDVYWIKFVHISNARFAKRKLDEFQFLGNLLQVTYAPEYETISDTK
D7TDI3_______________EPPAVRVYTICDESRYLIVRNVPALGCGDDLLNLFASYGDIEECKPMDAEDCEPFTDVYWIKFRLVSNARFAKRKLDEFVFLGNRLKVEYAPHFESLSDTK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain