SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58035

Length: 318 nt

UniGene Fasta

>sp_v1.1_unigene58035
CTATTGATGATCCAGAGGTAAGGAAAGGCTTCCTAGATGCAATTGCAAAGATGTACAATGAGGAGAAGGGGGAAAGATTTCGAAGACAATTTGTTCAGCTTGCATCTCTTAGTGGCCCCTTCAACACACGTGGTGCTTGGGCAAATCGCATAGATCGAGCCCAAGATGACCTGATTGGTTGGTGGAGGATGCATGGGGATGGTGCTCCAGAGCTCAAAGATCTAGCTATGCATTTGTTGTCTCAGATTGCTAGTTCCTCTGCAACAGAGAGGAATTGGTCCACATACAGCTTCATCCACTCTATCAAGAGGAACAAGC

Ace file of the UniGene sp_v1.1_unigene58035

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAT family dimerisation domain containing protein n=2 Tax=Oryza sativa RepID=Q2R1C3_ORYSJ	-	-	7.0e-12	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	hat family dimerisation domain containing protein	-	-	1.13429e-12	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HAT dimerisation	IPR008906	-	1.13429e-12	57%
Blast2go	Ribonuclease H-like domain	IPR012337	-	1.13429e-12	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADK7

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 105 - 250

Fln protein: IDDPEVRKGFLDAIAKMYNEEKGERFRRQFVQLASLSGPFNTRGAWANRIDRAQDDLIGWWRMHGDGAPELKDLAMHLLSQIASSSATERNWSTYSFIHSIKRNK

Protein Length: 106

Fln nts: CTATTGATGATCCAGAGGTAAGGAAAGGCTTCCTAGATGCAATTGCAAAGATGTACAATGAGGAGAAGGGGGAAAGATTTCGAAGACAATTTGTTCAGCTTGCATCTCTTAGTGGCCCCTTCAACACACGTGGTGCTTGGGCAAATCGCATAGATCGAGCCCAAGATGACCTGATTGGTTGGTGGAGGATGCATGGGGATGGTGCTCCAGAGCTCAAAGATCTAGCTATGCATTTGTTGTCTCAGATTGCTAGTTCCTCTGCAACAGAGAGGAATTGGTCCACATACAGCTTCATCCACTCTATCAAGAGGAACAAGC

Fln Alignment:

sp_v1.1_unigene58035___DPEVRKGFLDAIAKMYNEE-KGERFRRQFVQLASLSGPFNTRGAWANRIDRAQDDLIGWWRMHGDGAPELKDLAMHLLSQIASSSATERNWSTYSFIHSIKRNK
D5ADK7_______________DGEVKEGLYKCIERMVSDSNKQDEIHNKLLHFNESVGTFGM--AMAVR-GRARDPPAYWWQQFGSQCHELHKFAVRILSQTCSAFGCERNWSVFERIHTKKRNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain