SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene58010

Length: 341 nt

UniGene Fasta

>sp_v1.1_unigene58010
ATGGGGTCGATCCAGAATACCATCAGTGCTACCAACTGACGGAGAAATCTGATGTCTACAGCTTCGGGGTTGTTTTGTTGGAGATCATCTCTGGTGAATTAGCAGTAGACATGAGTCGAAATGCAAGGGACATCAACCTGGCTAACATGGCCATAACGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATAAGCAGCTGGAGATCGAACTGAATCACAAGGTGAAGGCCATGGTAACTGCAGCTGCAGAATTGGCCTTCGGATGCCTGCTCTCAGAGAGGGTTGAGAGACCATATATGAATGAAATTATTGCTCAGCTCGAGAAAATCAGACAATCA

Ace file of the UniGene sp_v1.1_unigene58010

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Wall-associated kinase, putative n=1 Tax=Ricinus communis RepID=B9SFY5_RICCO	-	-	1.0e-30	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	serine threonine protein kinase family protein	-	-	2.004e-30	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	2.004e-30	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	2.004e-30	74%
Blast2go	Protein kinase-like domain	IPR011009	-	2.004e-30	74%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAR4

Fln msg: Distance to subject end: 50 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 113 - 166

Fln protein: GVDPEYHQCYQLTEKSDVYSFGVVLLEIISGELAVDMSRNARDINLANMAITKIQEGALHELVDKQLEIELNHKVKAMVTAAAELAFGCLLSERVERPYMNEIIAQLEKIRQS

Protein Length: 114

Fln nts: _-_ATGGGGTCGATCCAGAATACCATCAGTGCTACCAACTGACGGAGAAATCTGATGTCTACAGCTTCGGGGTTGTTTTGTTGGAGATCATCTCTGGTGAATTAGCAGTAGACATGAGTCGAAATGCAAGGGACATCAACCTGGCTAACATGGCCATAACGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATAAGCAGCTGGAGATCGAACTGAATCACAAGGTGAAGGCCATGGTAACTGCAGCTGCAGAATTGGCCTTCGGATGCCTGCTCTCAGAGAGGGTTGAGAGACCATATATGAATGAAATTATTGCTCAGCTCGAGAAAATCAGACAATCA

Fln Alignment:

sp_v1.1_unigene58010___PEYHQCYQLTEKSDVYSFGVVLLEIISGELAVDMSRNARDINLANMAITKIQE-GALHELVDKQLEIELNHKVKAMVTAAAELAFGCLLSERVERPYMNEIIAQLEKIR
D5AAR4_______________PEYVATGHLTTRSDVYSFGVVLLELLSGRRTVDKNRPPGEQNLVEWAKPSLNDKRKVYHIMDTRMEGQ--YSVKG-AYCASKLALECLNPESKFRPHMKEVVERLEQLQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain