SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57894

Length: 479 nt

UniGene Fasta

>sp_v1.1_unigene57894
GGGAGATGCTCATCTGAAGAATGGTACAGTGAGCCTTAGCAGAGAGCTGGGAGTACCAACTTCAAGTGCAGGTAGGGCATTGTACAACAGACCAGTTAGATTTCTGGACCCTTATACAAAAGTTTCTGCTTCTTTCAAAACACGTTTCTCGTTTTCTGTAACCAATGTGGGTCCTGTTCCTGTTTCAATTGGGGATGGATTAGCATTTGTTATTGCTCCAGATGATCACTCTCTGGGTAGCACTGGAGGCTATTTGGGGTGATGAGTCCAACAGGCCTCAATGAACCCTCACCCCCTCCTGGGAATACAATTGCAGTGGAATTTGATACTTTTTTGGATGTAGAATTTCACGATCCTAATGGAAACCATATCGGTTTAGACATCAACAACATGACTTCCGTAGCGGTAGCGGATTTGGGTAGCATAAATATAGATATGAAGACCGGTAATCTCATCACAGCATGGATTGAATATGATAA

Ace file of the UniGene sp_v1.1_unigene57894

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lectin protein kinase family protein	-	-	2.0e-39	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	lectin protein kinase family protein	-	-	3.62553e-39	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	3.62553e-39	72%
Blast2go	transferase activity	GO:0016740	Molecular Function	3.62553e-39	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.62553e-39	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Legume lectin domain	IPR001220	-	3.62553e-39	72%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	3.62553e-39	72%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	3.62553e-39	72%
Blast2go	Legume lectin, beta chain, Mn/Ca-binding site	IPR019825	-	3.62553e-39	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NK70

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 154 aas, your sequence is shorter than subject: 87 - 366

Fln protein: GDAHLKNGTVSLSRELGVPTSSAGRALYNRPVRFLDPYTKVSASFKTRFSFSVTNVGPVPVSIGDGLAFVIAPDDHSLGSTGGYLG*

Protein Length: 88

Fln nts: GGGAGATGCTCATCTGAAGAATGGTACAGTGAGCCTTAGCAGAGAGCTGGGAGTACCAACTTCAAGTGCAGGTAGGGCATTGTACAACAGACCAGTTAGATTTCTGGACCCTTATACAAAAGTTTCTGCTTCTTTCAAAACACGTTTCTCGTTTTCTGTAACCAATGTGGGTCCTGTTCCTGTTTCAATTGGGGATGGATTAGCATTTGTTATTGCTCCAGATGATCACTCTCTGGGTAGCACTGGAGGCTATTTGGGGTGATGAGTCCAACAGGCCTCAATGAACCCTCACCCCCTCCTGGGAATACAATTGCAGTGGAATTTGATACTTTTTTGGATGTAGAATTTCACGATCCTAATGGAAACCATATCGGTTTAGACATCAACAACATGACTTCCGTAGCGGTAGCGGATTTGGGTAGCATAAATATAGATATGAAGACCGGTAATCTCATCACAGCATGGATTGAATATGATAA

Fln Alignment:

sp_v1.1_unigene57894___GDAHLKNGTVSLSRELGVPTSSAGRALYNRPVRFLDPY-TKVSASFKTRFSFSVTNVGPVPVSIGDGLAFVIAP
A9NK70_______________GDAEVIADGESSVRICGSSPRTAGRLMYGRPVRLLQPLGPRSSVSFSSYFSFSMSS------GNGDGLAFVILP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain