SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57851

Length: 504 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene57851
TATTGGCAACAAACATTGCTGAGACTAGTATCACTATTGATGATGTTATATATGTTATTGATACGGGACGTCATAAAGAAATGAGTTATGACCATACCAAAGGTCTCTCATGTCTTCAGGAAACATGGATATCTAAAGCCAGTGCAAAACAAAGGCGTGGGCGAGTTGGCAGAGTTCAACCTGGATGTTGCTTCCGGATTTACAGCAGGCAACAGTTTCAGCAGCTTGCAGAACAGCAACTTCCAGAAATTTTGCGCGTTTCTCTTGACAGGCTATGCTTGAAGGTCAGTTTATACCTGATTGTACAAGATTGTAATGGTCCCTGGGTAAGAAAAGATTTACTATTTATATCATCATTCTTTTTGTTGATCTAGATTCTGAATGCAAAGGGAACTGCAGGTAAAAGCTTTTCTTGGTGGCCCACTTCAAGATACAACACAGAGAATGCTTACTTCTCCAAGCCCTGAGGTCATAAGGGCATCAGTGAGTGGCCTACTGTGTATT

Ace file of the UniGene sp_v1.1_unigene57851 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase, putative	-	-	8.0e-12	41%
FL-Next	sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	atp-dependent rna	-	-	1.09224e-23	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	1.09224e-23	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P0CE10

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1046 aas, your sequence is shorter than subject: 124 - 1787

Fln protein: LATNIAETSITIDDVIYVIDTGRHKEMSYDHTKGLSCLQETWISKASAKQRRGRVGRVQPGCCFRIYSRQQFQQLAEQQLPEILRVSLDRLCLKVSLYLIVQDCNGPWVRKDLLFISSFFLLI*

Protein Length: 125

Fln nts: TATTGGCAACAAACATTGCTGAGACTAGTATCACTATTGATGATGTTATATATGTTATTGATACGGGACGTCATAAAGAAATGAGTTATGACCATACCAAAGGTCTCTCATGTCTTCAGGAAACATGGATATCTAAAGCCAGTGCAAAACAAAGGCGTGGGCGAGTTGGCAGAGTTCAACCTGGATGTTGCTTCCGGATTTACAGCAGGCAACAGTTTCAGCAGCTTGCAGAACAGCAACTTCCAGAAATTTTGCGCGTTTCTCTTGACAGGCTATGCTTGAAGGTCAGTTTATACCTGATTGTACAAGATTGTAATGGTCCCTGGGTAAGAAAAGATTTACTATTTATATCATCATTCTTTTTGTTGATCTAGATTCTGAATGCAAAGGGAACTGCAGGTAAAAGCTTTTCTTGGTGGCCCACTTCAAGATACAACACAGAGAATGCTTACTTCTCCAAGCCCTGAGGTCATAAGGGCATCAGTGAGTGGCCTACTGTGTATT

Fln Alignment:

sp_v1.1_unigene57851___ATNIAETSXXXXXXXXXXXTGRHKEMSYDHTKGLSCLQETWISKASAKXXXXXXXXXQPGCCFRIYSRXXXXXXXXXQLPEILRVSLDRLCLKV
P0CE10_______________ATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain