SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57845

Length: 290 nt

UniGene Fasta

>sp_v1.1_unigene57845
CATGGAAGACCGGTTCCAACAGAAATATTTGAGCCGCCTGGTGGCCATCCTGCGCCGTGCGAGAACTCAACGCGCCACCAGCGTCTCCACTCGAAGCCGAACCGTGAAATTTGCGGCGGATCTGTCACTGGCCATGACGTCAAGGGGTCGAACCGCGTGGAGCCGGGCCATCATCGGAAAAAATCTTTTTTGGCTGAGGAAATCGCGCTGCCTACTGCGAGGAGTTAAATCCAGAGGAAATTTCGGTTCAGTAAGTAGATCGGTGCATGCCAGAACCAGGCTCGGGCAAA

Ace file of the UniGene sp_v1.1_unigene57845

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BHLH protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q8H5F1_ORYSJ	-	-	0.0001	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	unknown [Picea sitchensis]	-	-	9.26869e-23	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX4

Fln msg: Distance to subject end: 84 aas, atg_distance in limit (1-15): atg_distance = 13, your sequence is shorter than subject: 96 - 192

Fln protein: MEDRFQQKYLSRLVAILRRARTQRATSVSTRSRTVKFAADLSLAMTSRGRTAWSRAIIGKNLFWLRKSRCLLRGVKSRGNFGSVSRSVHARTRLGQ

Protein Length: 97

Fln nts: C_-_ATGGAAGACCGGTTCCAACAGAAATATTTGAGCCGCCTGGTGGCCATCCTGCGCCGTGCGAGAACTCAACGCGCCACCAGCGTCTCCACTCGAAGCCGAACCGTGAAATTTGCGGCGGATCTGTCACTGGCCATGACGTCAAGGGGTCGAACCGCGTGGAGCCGGGCCATCATCGGAAAAAATCTTTTTTGGCTGAGGAAATCGCGCTGCCTACTGCGAGGAGTTAAATCCAGAGGAAATTTCGGTTCAGTAAGTAGATCGGTGCATGCCAGAACCAGGCTCGGGCAAA

Fln Alignment:

sp_v1.1_unigene57845___FQQKYLSRLVAILRRARTQRATSVSTRSRTVKFAADLSLAMTSRGRTAWSRAIIGKNLFWLRKSRCLLRGVKSRGNFGSVSRSVHART
A9NUX4_______________FQRKYFSRVVAVLRSGRIENATSASARIRTVKFAADLSMAMTSRGRTAWSRAILGKYIIRLKRSRCQLRVVKSRGNLHGIRTSASGKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain