SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57843

Length: 277 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene57843
GGACCAACAATTACAGACCAACTTTGAATTGCAATCAGACAGACCTAAGGATTTGGGTATGCAAGCAAGAAAATGTGGGTGGTGGAAGTGGATTTTCAATGGACACTCAACTTTTCAAGCTGGATGAAAAGTTGCTGATTGATGCTCAGTTTCTGTTTGTTGGCGCTAAGATTGGAGAAGGAGCTCATGGAAAAGTGTATCAGGGGAGATATCGAGATCAAGCTGTTGCTGTGAAAATACTTCAACGGGGTGAGGCAGTGGAAGAAAGAGCAACACT

Ace file of the UniGene sp_v1.1_unigene57843

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase n=3 Tax=Arabidopsis RepID=Q39029_ARATH	-	-	2.0e-13	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	protein kinase	-	-	6.95817e-15	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	6.95817e-15	77%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	6.95817e-15	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	6.95817e-15	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine/threonine-protein kinase, ATN1-like	IPR015784	-	6.95817e-15	77%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	6.95817e-15	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPW0

Fln msg: Distance to subject end: 287 aas, atg_distance in limit (1-15): atg_distance = 7, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 59 - 385

Fln protein: MDTQLFKLDEKLLIDAQFLFVGAKIGEGAHGKVYQGRYRDQAVAVKILQRGEAVEERAT

Protein Length: 60

Fln nts: GGACCAACAATTACAGACCAACTTTGAATTGCAATCAGACAGACCTAAGGATTTGGGTATGCAAGCAAGAAAATGTGGGTGGTGGAAGTGGATTTTCAATGGACACTCAACTTTTCAAGCTGGATGAAAAGTTGCTGATTGATGCTCAGTTTCTGTTTGTTGGCGCTAAGATTGGAGAAGGAGCTCATGGAAAAGTGTATCAGGGGAGATATCGAGATCAAGCTGTTGCTGTGAAAATACTTCAACGGGGTGAGGCAGTGGAAGAAAGAGCAACACT

Fln Alignment:

sp_v1.1_unigene57843___FKLDEKLLIDAQFLFVGAKIGEGAHGKVYQGRYRDQAVAVKILQRGEAVEERA
B8LPW0_______________FRLDERFLIDPQLICVGSKIGEGAHGKVYKGMYQGESVAVKILQRGETPEEKA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain