SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57548

Length: 359 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene57548
GACAGGTGCTCTCTCTGTCCTTGATCCTCGAACTCCCTTTCCCGCCTCCATTTTTTTCCACCGTATTCCTCCCAGCTCCATTGATTTTGGCATCCATTCGATCCTGGGTTCGACCCCGACCAAAGCTAAAAACTGCAGCAGCTTCTCCTGTATGCAATGTTTTATTCACATTTCATATTGGCCAAGAAAGGGCCACTCGGAACAGTATGGATTGCAGCTCATCTAGAGCGCAAGCTGCGCAAGAATCAGGTCACGGAGACCAACATCAGCGCTTCTGTTGACTCTATCATGTTTCCTGAAGTACCCATTGCCCTTCGACTATCAGGGCACCTTCTGCTTGGTGTGGTTCGGATATATTC

Ace file of the UniGene sp_v1.1_unigene57548

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cohesin subunit rad21, putative; K06670 cohesin complex subunit SCC1	-	-	4.0e-26	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	cohesin subunit	-	-	2.64752e-30	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	2.64752e-30	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A868

Fln msg: Distance to subject end: 610 aas, your sequence is shorter than subject: 67 - 678

Fln protein: MFYSHFILAKKGPLGTVWIAAHLERKLRKNQVTETNISASVDSIMFPEVPIALRLSGHLLLGVVRIY

Protein Length: 68

Fln nts: GACAGGTGCTCTCTCTGTCCTTGATCCTCGAACTCCCTTTCCCGCCTCCATTTTTTTCCACCGTATTCCTCCCAGCTCCATTGATTTTGGCATCCATTCGATCCTGGGTTCGACCCCGACCAAAGCTAAAAACTGCAGCAGCTTCTCCTGTATGCA_-_ATGTTTTATTCACATTTCATATTGGCCAAGAAAGGGCCACTCGGAACAGTATGGATTGCAGCTCATCTAGAGCGCAAGCTGCGCAAGAATCAGGTCACGGAGACCAACATCAGCGCTTCTGTTGACTCTATCATGTTTCCTGAAGTACCCATTGCCCTTCGACTATCAGGGCACCTTCTGCTTGGTGTGGTTCGGATATATTC

Fln Alignment:

sp_v1.1_unigene57548___MFYSHFILAKKGPLGTVWIAAHLERKLRKNQVTETNISASVDSIMFPEVPIALRLSGHLLLGVVRIY
D5A868_______________MFYSHFILAKKGPLGTVWIAAHLERKLRKNQVTETNISASVDSIMFPEVPIALRLSGHLLLGVVRIY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
179	75		25		0.996476
181	75	25			0.996477
182			25	75	0.996477
185	25		75		0.996476
188	75			25	0.996476
189	66			33	0.997452
193	66		33		0.997452
194		33	66		0.997452
195			66	33	0.997452
197		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain