SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57527

Length: 326 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene57527
ATGGGGTGGTGCAATGTTATTGATCCTTCATTGAAGCTGGATGAATGGACAGAAGAGGAGGACACCAAATTGAAAGAGGCAGTTTCTCTCCATGGATATTGCTGGGCCAAGGTTGCTCTGTCTGTCCTTCCTCGAACTGATAATCAATGCCGGCGGAGGTGGATGGTTACATCCACAAGAACTGGCTGCAGCTCAAAAGGCGGGAAAAATACGGAAAGCAGCTCTGATATCCAATTTTGTTGGCCGGAAGAAGGGAAGGCCTACAATTGGTCCTAGTGATTTTGTTCCAGAACAGGAGGGAGGGTCATGTTCTGAGGCAAATGGAG

Ace file of the UniGene sp_v1.1_unigene57527

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor, putative	-	-	1.0e-21	59%
FL-Next	tr=R2R3-MYB transcription factor MYB3; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	39%
Blast2go	myb transcription factor	-	-	3.85968e-24	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SANT/Myb domain	IPR001005	-	3.85968e-24	70%
Blast2go	Homeodomain-like	IPR009057	-	3.85968e-24	70%
Blast2go	Homeodomain-related	IPR012287	-	3.85968e-24	70%
Blast2go	Myb, DNA-binding	IPR014778	-	3.85968e-24	70%
Blast2go	Myb transcription factor	IPR015495	-	3.85968e-24	70%
Blast2go	Myb domain, DNA-binding	IPR017930	-	3.85968e-24	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A5JYE7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 129 aas, your sequence is shorter than subject: 92 - 307

Fln protein: MGWCNVIDPSLKLDEWTEEEDTKLKEAVSLHGYCWAKVALSVLPRTDNQCRRRWMVTSTRTGCSSKGGKNTESSSDIQFCWPEEGKAYNWS*

Protein Length: 93

Fln nts: ATGGGGTGGTGCAATGTTATTGATCCTTCATTGAAGCTGGATGAATGGACAGAAGAGGAGGACACCAAATTGAAAGAGGCAGTTTCTCTCCATGGATATTGCTGGGCCAAGGTTGCTCTGTCTGTCCTTCCTCGAACTGATAATCAATGCCGGCGGAGGTGGATGGTTACATCCACAAGAACTGGCTGCAGCTCAAAAGGCGGGAAAAATACGGAAAGCAGCTCTGATATCCAATTTTGTTGGCCGGAAGAAGGGAAGGCCTACAATTGGTCCTAGTGATTTTGTTCCAGAACAGGAGGGAGGGTCATGTTCTGAGGCAAATGGAG

Fln Alignment:

sp_v1.1_unigene57527___WCNVIDPSLKLDEWTEEEDTKLKEAVSLHGYCWAKVALSVLPRTDNQCRRRWMVTSTR
A5JYE7_______________WFNQLDPRINRRPFTEEEEERLLAAHRLHGNKWAMIARLFPGRTDNAVKNHWHVIMAR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain