SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57508

Length: 308 nt

UniGene Fasta

>sp_v1.1_unigene57508
CGTCGTGACCTTGGCTGTCAGTGGGTCGTTCGCCAGCCGTTTCAACTGCGAAGGAACCGGGAGATCTGCGGAGCAGCCATGTCTTTGGGATACGCAGAGAAGCTTTCGTACAGAGAGGACTTGGGCAATGTTGGAATGTCTGAACTTTTTGATTCTTCAGACATTTTACAGTCTAAGATAGAGGAGCTGGCAAAACTCATTGAAGAGAGCAAGCACCTGGTTGCATTTACTGGAGCTGGTATTTCTACTTCATGTGGCATTCCTGACTTTCGTGGTCCCACAGGAATTTGGACTCTTCAGCGTGAAGG

Ace file of the UniGene sp_v1.1_unigene57508

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone deacetylase n=1 Tax=Populus trichocarpa RepID=B9GFM4_POPTR	-	-	9.0e-30	82%
FL-Next	tr=Histone deacetylase; subsp. trichocarpa).	-	-	0.0	82%
Blast2go	histone deacetylase	-	-	1.70627e-29	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	1.70627e-29	86%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	1.70627e-29	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent deacetylase, sirtuin family	IPR003000	-	1.70627e-29	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9GFM4

Fln msg: Distance to subject end: 387 aas, your sequence is shorter than subject: 76 - 464

Fln protein: MSLGYAEKLSYREDLGNVGMSELFDSSDILQSKIEELAKLIEESKHLVAFTGAGISTSCGIPDFRGPTGIWTLQRE

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGGTCGTTCGCCAGCCGTTTCAACTGCGAAGGAACCGGGAGATCTGCGGAGCAGCC_-_ATGTCTTTGGGATACGCAGAGAAGCTTTCGTACAGAGAGGACTTGGGCAATGTTGGAATGTCTGAACTTTTTGATTCTTCAGACATTTTACAGTCTAAGATAGAGGAGCTGGCAAAACTCATTGAAGAGAGCAAGCACCTGGTTGCATTTACTGGAGCTGGTATTTCTACTTCATGTGGCATTCCTGACTTTCGTGGTCCCACAGGAATTTGGACTCTTCAGCGTGAAGG

Fln Alignment:

sp_v1.1_unigene57508___MSLGYAEKLSYREDLGNVGMSELFDSSDILQSKIEELAKLIEESKHLVAFTGAGISTSCGIPDFRGPTGIWTLQRE
B9GFM4_______________MSLGYAEKLSYIEDVGNVGMSEFFDSSHVLQEKIERLAEMIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain