SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57455

Length: 384 nt

UniGene Fasta

>sp_v1.1_unigene57455
ATGGGGGTATATGAATACGTGGATACCTAAGAGGAGGGGATTGTGACAGGATATTCCTCTTCCTCCCTCTGGTGTCGCTTGTAATGGGAGAATCAAGGCTTGGGAACTGATGAAAACAAGCCTGTCTGCCTTCTTGTTTTCATGCTTTTGGTTGTCTCTGCACAGGGGGATATAGATAGGAATCCAGTGGAAATGGGCCGTGCTCCATGCTGTTCAAAAGTTGGTTTGCACAGAGGTCCATGGACTGCTAGGGAGGATCTGCTGCTGACAAAATACATTGAAGCTCATGGTNAAGGCCAATGGCGAGCTCTGCCCAAGAAAGCAGGTCTGCTGCGGTGTGGAAAAAGTTGCAGGCTTCGATGGATGAATTATTTGAGGCCCGAT

Ace file of the UniGene sp_v1.1_unigene57455

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[KAD] COG5147 Myb superfamily proteins, including transcription factors and mRNA splicing factors	-	-	5.0e-05	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein	-	-	4.50783e-30	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SANT/Myb domain	IPR001005	-	4.50783e-30	90%
Blast2go	Homeodomain-like	IPR009057	-	4.50783e-30	90%
Blast2go	Homeodomain-related	IPR012287	-	4.50783e-30	90%
Blast2go	Myb, DNA-binding	IPR014778	-	4.50783e-30	90%
Blast2go	Myb transcription factor	IPR015495	-	4.50783e-30	90%
Blast2go	Myb domain, DNA-binding	IPR017930	-	4.50783e-30	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC04

Fln msg: Distance to subject end: 285 aas, your sequence is shorter than subject: 81 - 349

Fln protein: MLLVVSAQGDIDRNPVEMGRAPCCSKVGLHRGPWTAREDLLLTKYIEAHGKGQWRALPKKAGLLRCGKSCRLRWMNYLRPD

Protein Length: 82

Fln nts: ATGGGGGTATATGAATACGTGGATACCTAAGAGGAGGGGATTGTGACAGGATATTCCTCTTCCTCCCTCTGGTGTCGCTTGTAATGGGAGAATCAAGGCTTGGGAACTGATGAAAACAAGCCTGTCTGCCTTCTTGTTTTC_-_ATGCTTTTGGTTGTCTCTGCACAGGGGGATATAGATAGGAATCCAGTGGAAATGGGCCGTGCTCCATGCTGTTCAAAAGTTGGTTTGCACAGAGGTCCATGGACTGCTAGGGAGGATCTGCTGCTGACAAAATACATTGAAGCTCATGGTaAAGGCCAATGGCGAGCTCTGCCCAAGAAAGCAGGTCTGCTGCGGTGTGGAAAAAGTTGCAGGCTTCGATGGATGAATTATTTGAGGCCCGAT

Fln Alignment:

sp_v1.1_unigene57455___MGRAPCCSKVGLHRGPWTAREDLLLTKYIEAHGKGQWRALPKKAGLLRCGKSCRLRWMNYLRP
D5AC04_______________MGRAPCCSKVGVNKGAWSAEEDNLLVKYIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYLRP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain