SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57331

Length: 435 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene57331
AAATATTGAGAGTACTTGCTATAATATTTGAAAATTGTCGAAATAAGGGCTCTTTCACTGGATTAGAGCATTTCACATACCTACTGTCGTCAAATGATCCTGATATACTTTTAGCAGCCCTGCATGCTCTTGCAGCTCTTGTAAAAATTAACCCCGCCAAGCTCCACCTGAGTGGAAAACTGCCGGGAAGTGCAGTGTTGAATCGTCATTTGCTTGCCCTATCACAAGGTTGGGGAATAAAGAAGAAGGATTGGGTTTGTTCTCCTGTGTTGTAGAAATGGATGTGGTGAAGCAGCAAGTCAATTAGGATCAACTCTTCATTTTGAGTTTTATTCTGATCGTGGTCTGGACAATGCAGAAAATTTTAATGGTGCAAGTCTGTCAGGTTTACAAGTGATTCATATTCCTGATTTGCATCTACAGCCAAATGAATTG

Ace file of the UniGene sp_v1.1_unigene57331

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin protein ligase upl2, putative n=1 Tax=Ricinus communis RepID=B9SMZ3_RICCO	-	-	2.0e-22	53%
FL-Next	sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%
Blast2go	e3 ubiquitin protein ligase	-	-	8.86977e-28	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	8.86977e-28	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	8.86977e-28	65%
Blast2go	cytosol	GO:0005829	Cellular Component	8.86977e-28	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	8.86977e-28	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	8.86977e-28	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GY23

Fln msg: Overlapping hits, possible frame ERROR between 248 and 233, Unexpected STOP codon at 3' end. Distance to subject end: 3450 aas, your sequence is shorter than subject: 102 - 3681

Fln protein: ILRVLAIIFENCRNKGSFTGLEHFTYLLSSNDPDILLAALHALAALVKINPAKLHLSGKLPGSAVLNRHLLALSQGxxxxxxxLGLFSCVVEMDVVKQQVN*

Protein Length: 103

Fln nts: AAATATTGAGAGTACTTGCTATAATATTTGAAAATTGTCGAAATAAGGGCTCTTTCACTGGATTAGAGCATTTCACATACCTACTGTCGTCAAATGATCCTGATATACTTTTAGCAGCCCTGCATGCTCTTGCAGCTCTTGTAAAAATTAACCCCGCCAAGCTCCACCTGAGTGGAAAACTGCCGGGAAGTGCAGTGTTGAATCGTCATTTGCTTGCCCTATCACAAGGTxxxxxxxxxxxxxxxxxxxxxTTGGGTTTGTTCTCCTGTGTTGTAGAAATGGATGTGGTGAAGCAGCAAGTCAATTAGGATCAACTCTTCATTTTGAGTTTTATTCTGATCGTGGTCTGGACAATGCAGAAAATTTTAATGGTGCAAGTCTGTCAGGTTTACAAGTGATTCATATTCCTGATTTGCATCTACAGCCAAATGAATTG

Fln Alignment:

sp_v1.1_unigene57331___ILRVLAIIFENCRNKGSFTGLE-HFTYLLSSNDPDIXXXXXXXXXXXVKINPAKLHLSGKLPGSAVLNRHLLALSQGWxxxxxGLGLFSCVVE
Q8GY23_______________VLRVIRVVLENCTNKHFYSSYEQHLSLLLASTDADVVEACLQTLAAFLKRQIGKYSIR-----DASLNSKLFSLAQGWxxxxxGLGLTSCAAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain